2.500 Å
X-ray
2002-08-29
Name: | Glyceraldehyde-3-phosphate dehydrogenase, glycosomal |
---|---|
ID: | G3PG_TRYCR |
AC: | P22513 |
Organism: | Trypanosoma cruzi |
Reign: | Eukaryota |
TaxID: | 5693 |
EC Number: | 1.2.1.12 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 9 % |
C | 91 % |
B-Factor: | 46.054 |
---|---|
Number of residues: | 45 |
Including | |
Standard Amino Acids: | 43 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.494 | 1100.250 |
% Hydrophobic | % Polar |
---|---|
48.77 | 51.23 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 55.31 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
3.71805 | 2.94677 | 47.3456 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | N | ARG- 12 | 3.28 | 162.73 | H-Bond (Protein Donor) |
O1N | N | ILE- 13 | 3.02 | 166.38 | H-Bond (Protein Donor) |
C4N | CD1 | ILE- 13 | 3.48 | 0 | Hydrophobic |
C1B | CG | MET- 39 | 4.1 | 0 | Hydrophobic |
N6A | O | GLN- 91 | 3.42 | 164.49 | H-Bond (Ligand Donor) |
C2D | CB | ALA- 135 | 4.39 | 0 | Hydrophobic |
C4N | SG | CYS- 166 | 3.51 | 0 | Hydrophobic |
O7N | ND2 | ASN- 335 | 3.27 | 173.9 | H-Bond (Protein Donor) |
C5N | CB | TYR- 339 | 4.2 | 0 | Hydrophobic |