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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3tsc NAD Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3tsc NADUncharacterized protein / 1.442
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 1.296
3s55 NADPutative short-chain dehydrogenase/reductase / 1.231
3sx2 NADUncharacterized protein / 1.136
5ig2 NADShort-chain dehydrogenase/reductase SDR / 1.051
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.961
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.927
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.912
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.911
4yag NAIC alpha-dehydrogenase / 0.909
3l77 NJPShort-chain alcohol dehydrogenase / 0.905
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.896
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.888
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.886
3qrw NDPPutative ketoacyl reductase 1.3.1 0.886
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.882
4j7x NAPSepiapterin reductase 1.1.1.153 0.874
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.873
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.869
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.860
3geg NADShort-chain dehydrogenase/reductase SDR / 0.859
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.857
4yai NAIC alpha-dehydrogenase / 0.857
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.853
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.852
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.848
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.848
3tn7 NJPShort-chain alcohol dehydrogenase / 0.848
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.848
3o26 NDPSalutaridine reductase / 0.844
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.843
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.842
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.841
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.841
4bmv NAPShort-chain dehydrogenase / 0.839
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.838
1iy8 NADLevodione reductase / 0.837
4b79 NADProbable short-chain dehydrogenase / 0.836
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.832
2jah NDPClavaldehyde dehydrogenase / 0.831
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.828
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.827
4fn4 NADShort chain dehydrogenase / 0.827
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.825
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.823
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.823
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.822
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.822
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.821
4j7u NAPSepiapterin reductase 1.1.1.153 0.821
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.820
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.819
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.819
3p19 NDPPutative blue fluorescent protein / 0.819
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.819
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.813
2p5y NADUDP-glucose 4-epimerase / 0.813
3sju NDPKeto reductase / 0.813
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.811
5jla NADPutative short-chain dehydrogenase/reductase / 0.811
3ak4 NADNADH-dependent quinuclidinone reductase / 0.810
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.810
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.807
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.807
1oaa NAPSepiapterin reductase 1.1.1.153 0.805
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.804
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.802
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.801
2wsb NADGalactitol dehydrogenase / 0.799
1zem NADXylitol dehydrogenase / 0.792
4kwh NAPReductase homolog / 0.792
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.791
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.791
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.790
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.789
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.788
3d3w NAPL-xylulose reductase 1.1.1.10 0.786
3wds NADNADH-dependent quinuclidinone reductase / 0.786
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.783
1pr9 NAPL-xylulose reductase 1.1.1.10 0.782
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.782
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.782
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.781
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.780
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.780
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.779
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.778
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.778
2wdz NADGalactitol dehydrogenase / 0.777
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.775
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.774
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.773
4dbz NDPPutative ketoacyl reductase 1.3.1 0.772
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.770
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.770
1orr NADCDP-paratose 2-epimerase / 0.769
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.765
4qec NAPElxO / 0.764
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.762
1ipe NDPTropinone reductase 2 1.1.1.236 0.762
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.762
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.760
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.760
3ai3 NDPNADPH-sorbose reductase / 0.759
3icp NADNAD-dependent epimerase/dehydratase / 0.759
3tox NAPPutative oxidoreductase / 0.759
1w4z NAPPutative ketoacyl reductase 1.3.1 0.757
1xkq NDPUncharacterized protein / 0.757
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.757
2bd0 NAPSepiapterin reductase / 0.754
3r3s NADPutative oxidoreductase / 0.754
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.752
4hwk NAPSepiapterin reductase 1.1.1.153 0.750
2hmv ADPKtr system potassium uptake protein A / 0.749
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.748
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.748
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.747
2c29 NAPDihydroflavonol 4-reductase / 0.745
1h83 FADPolyamine oxidase 1.5.3.14 0.744
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.743
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.741
1sny NAPLD36273p / 0.740
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.740
3ko8 NADNAD-dependent epimerase/dehydratase / 0.740
4gdp FADPolyamine oxidase FMS1 / 0.739
3u4c NDPNADPH-dependent reductase BacG / 0.738
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.738
1i3l NADUDP-glucose 4-epimerase / 0.737
1x7h NDPPutative ketoacyl reductase 1.3.1 0.737
1ek5 NADUDP-glucose 4-epimerase / 0.735
2dte NAIGlucose 1-dehydrogenase related protein / 0.735
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.735
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.735
3aw9 NADNAD-dependent epimerase/dehydratase / 0.734
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.733
3orf NADDihydropteridine reductase 1.5.1.34 0.733
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.732
4yv2 S4MSpermidine synthase, putative / 0.732
5jyd NADShort chain dehydrogenase / 0.730
1ae1 NAPTropinone reductase 1 / 0.729
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.728
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.726
2o06 MTASpermidine synthase 2.5.1.16 0.726
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.726
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.725
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.724
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.722
4yac NAIC alpha-dehydrogenase / 0.721
3a4v NADNDP-sugar epimerase / 0.720
3ai2 NDPNADPH-sorbose reductase / 0.720
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.720
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.720
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.719
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.719
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.718
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.718
5bxy SAHPutative RNA methylase family UPF0020 / 0.718
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
3lqf NADGalactitol dehydrogenase / 0.717
2jb2 FADL-amino acid oxidase / 0.716
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.714
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.714
2yr4 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.714
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.713
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.713
3mje NDPAmphB / 0.712
4qed NAPElxO / 0.712
1x7g NAPPutative ketoacyl reductase 1.3.1 0.711
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.711
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.711
3wmx NADNAD dependent epimerase/dehydratase / 0.711
3bmo NAPPteridine reductase / 0.710
3uce NDPDehydrogenase / 0.710
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.710
3kpf FADPolyamine oxidase 1.5.3.14 0.709
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.709
4wec NADShort chain dehydrogenase / 0.709
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.708
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.707
2bfo NDPPteridine reductase 1 1.5.1.33 0.706
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.703
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.703
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
4fp9 SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.702
2yut NAPPutative short-chain oxidoreductase / 0.701
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.701
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.700
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.700
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.699
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.699
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.698
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.698
3a4t SFGtRNA (cytosine(48)-C(5))-methyltransferase 2.1.1 0.698
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.696
4j4b NAIUncharacterized protein / 0.695
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.693
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.693
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.693
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.693
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.693
3a1n NADNDP-sugar epimerase / 0.691
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
2ji9 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.689
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.688
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.687
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.686
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.685
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.685
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.685
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.684
3go4 SAHUncharacterized protein / 0.684
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.684
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.682
1g1a NADdTDP-glucose 4,6-dehydratase / 0.682
4c4o NADSADH / 0.682
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.679
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.678
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.678
3dmt NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal 1.2.1.12 0.678
4hxy NDPPlm1 / 0.678
3ihg FADAklavinone 12-hydroxylase RdmE / 0.676
1vjt NADAlpha-glucosidase, putative / 0.675
2ore SAHDNA adenine methylase 2.1.1.72 0.675
2yy7 NADL-threonine dehydrogenase / 0.675
3a9w NADNDP-sugar epimerase / 0.675
1xcb NADRedox-sensing transcriptional repressor Rex / 0.674
2p5u NADUDP-glucose 4-epimerase / 0.674
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
3ada NADSubunit alpha of sarocosine oxidase / 0.673
3jyp NADQuinate/shikimate dehydrogenase (NAD(+)) / 0.673
5ccx SAHtRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A 2.1.1.220 0.673
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.672
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.672
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.671
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
2nyu SAMrRNA methyltransferase 2, mitochondrial / 0.670
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.670
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
1vrw NAIEnoyl-ACP reductase / 0.668
2zth SAMCatechol O-methyltransferase 2.1.1.6 0.668
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.668
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.667
3h4v NAPPteridine reductase 1 1.5.1.33 0.666
1boo SAHModification methylase PvuII 2.1.1.113 0.665
1sby NADAlcohol dehydrogenase 1.1.1.1 0.664
1rpn NDPGDP-mannose 4,6-dehydratase / 0.662
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.661
2bgl NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.661
3k7t FAD6-hydroxy-L-nicotine oxidase / 0.661
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.660
3mht SAHModification methylase HhaI 2.1.1.37 0.660
3rfx NADUronate dehydrogenase / 0.660
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.660
4jk3 NADUncharacterized protein / 0.660
5lc1 NADL-threonine 3-dehydrogenase / 0.660
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.659
3f1k NAPUncharacterized oxidoreductase YciK 1 0.659
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.659
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
1zh8 NAPUncharacterized protein / 0.658
2nq8 ZIDEnoyl-ACP reductase / 0.658
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.658
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.658
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.658
4wlu NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.657
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.656
1npt NADGlyceraldehyde-3-phosphate dehydrogenase / 0.656
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.656
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.656
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.656
4j49 NAIUncharacterized protein / 0.656
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.656
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.655
4eso NAPPutative oxidoreductase / 0.654
1rjg SAHLeucine carboxyl methyltransferase 1 2.1.1.233 0.653
1uxj NADMalate dehydrogenase / 0.653
2dfv NADL-threonine 3-dehydrogenase / 0.653
3c3y SAHO-methyltransferase / 0.653
3d64 NADAdenosylhomocysteinase / 0.653
4xcx SAHSmall RNA 2'-O-methyltransferase / 0.653
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.652
3sgl SAMtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC / 0.652
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.651
1la2 NADInositol-3-phosphate synthase 5.5.1.4 0.651
3abi NADUncharacterized protein / 0.651
5l3d FADLysine-specific histone demethylase 1A 1 0.651
1emd NADMalate dehydrogenase / 0.650
1nbo NADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic 1.2.1.13 0.650
2vhx NADAlanine dehydrogenase 1.4.1.1 0.650
3jyq NADQuinate/shikimate dehydrogenase (NAD(+)) / 0.650
4jnk NAIL-lactate dehydrogenase A chain 1.1.1.27 0.650