sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 1.000 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.619 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.613 | |
| 1u0z | RDC | Endoplasmin | / | 0.603 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.602 | |
| 1qy8 | RDI | Endoplasmin | / | 0.594 | |
| 1ysz | NEC | Endoplasmin | / | 0.590 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.581 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.579 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.579 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.573 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.567 | |
| 1yc1 | 4BC | Heat shock protein HSP 90-alpha | / | 0.566 | |
| 1yc4 | 43P | Heat shock protein HSP 90-alpha | / | 0.565 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.565 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.564 | |
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.563 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.563 | |
| 2hch | N5A | Endoplasmin | / | 0.559 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.559 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.558 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.557 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.556 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.555 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.554 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.553 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.553 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.549 | |
| 2cgf | P2N | ATP-dependent molecular chaperone HSP82 | / | 0.548 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.547 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.547 | |
| 1u0y | PA7 | Endoplasmin | / | 0.546 | |
| 1u2o | NEC | Endoplasmin | / | 0.545 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.544 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.543 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.539 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.538 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.538 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.537 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.534 | |
| 2xab | VHD | Heat shock protein HSP 90-alpha | / | 0.534 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.533 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.532 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.531 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.529 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.528 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.526 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.525 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.524 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.524 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.524 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.523 | |
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 0.522 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.521 | |
| 4ipe | ANP | TNF receptor-associated protein 1 | / | 0.520 | |
| 2hg1 | N5O | Endoplasmin | / | 0.519 | |
| 2gfd | RDA | Endoplasmin | / | 0.515 | |
| 2gqp | PA7 | Endoplasmin | / | 0.515 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.515 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.513 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.511 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 2yi5 | YI5 | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.506 | |
| 1qy5 | NEC | Endoplasmin | / | 0.505 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.505 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.505 | |
| 2fyp | RDE | Endoplasmin | / | 0.504 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.504 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.503 | |
| 3opd | HIE | Heat shock protein 83 | / | 0.503 | |
| 2exl | GDM | Endoplasmin | / | 0.502 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.502 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.501 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.499 | |
| 4nh8 | 2LC | Heat shock protein HSP 90-alpha | / | 0.499 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 3omu | IBD | Heat shock protein 83 | / | 0.498 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.498 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.497 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.495 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.494 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.493 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.493 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.493 | |
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 0.492 | |
| 2qfo | A13 | Heat shock protein HSP 90-alpha | / | 0.491 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 3ied | AN2 | HSP90 | / | 0.489 | |
| 3inw | JZB | Heat shock protein HSP 90-alpha | / | 0.489 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.489 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.488 | |
| 4xdm | GDM | Heat shock cognate 90 kDa protein | / | 0.488 | |
| 1uy6 | PU3 | Heat shock protein HSP 90-alpha | / | 0.486 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.486 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.485 | |
| 3eko | PYU | Heat shock protein HSP 90-alpha | / | 0.485 | |
| 2o1u | ANP | Endoplasmin | / | 0.484 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.483 | |
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 0.482 | |
| 2wi4 | ZZ4 | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.480 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.478 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.478 | |
| 1yt0 | ADP | Endoplasmin | / | 0.477 | |
| 2ior | ADP | Chaperone protein HtpG | / | 0.477 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.477 | |
| 3t0z | ATP | Heat shock protein HSP 90-alpha | / | 0.477 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.475 | |
| 2esa | GDM | Endoplasmin | / | 0.474 | |
| 4ivg | ANP | TNF receptor-associated protein 1 | / | 0.474 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 2xjx | XJX | Heat shock protein HSP 90-alpha | / | 0.473 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.473 | |
| 3hz1 | 42C | Heat shock protein HSP 90-alpha | / | 0.472 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 3mnr | SD1 | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 4b7p | 9UN | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 2qfo | A51 | Heat shock protein HSP 90-alpha | / | 0.468 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.465 | |
| 2bu8 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.464 | |
| 2yk2 | YJW | Heat shock protein HSP 90-alpha | / | 0.464 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.464 | |
| 3k99 | PFT | Heat shock protein HSP 90-alpha | / | 0.461 | |
| 1uyc | PU7 | Heat shock protein HSP 90-alpha | / | 0.459 | |
| 2po7 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.459 | |
| 2uwd | 2GG | Heat shock protein HSP 90-alpha | / | 0.459 | |
| 2vcj | 2EQ | Heat shock protein HSP 90-alpha | / | 0.458 | |
| 2vwc | BC2 | ATP-dependent molecular chaperone HSP82 | / | 0.458 | |
| 2zdy | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.458 | |
| 3pt6 | SAH | DNA (cytosine-5)-methyltransferase 1 | 2.1.1.37 | 0.457 | |
| 2xjj | L81 | Heat shock protein HSP 90-alpha | / | 0.455 | |
| 2yi6 | 6QM | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 3pej | BC2 | Endoplasmin homolog, putative | / | 0.454 | |
| 1bws | NDP | GDP-L-fucose synthase | / | 0.453 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.453 | |
| 2o1v | ADP | Endoplasmin | / | 0.452 | |
| 2bsm | BSM | Heat shock protein HSP 90-alpha | / | 0.451 | |
| 2zkj | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.451 | |
| 1bxk | NAD | dTDP-glucose 4,6-dehydratase 2 | / | 0.449 | |
| 3q5k | D1U | Heat shock protein 83-1 | / | 0.449 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.447 | |
| 3ogq | AB1 | Pol polyprotein | / | 0.447 | |
| 4awo | 99B | Heat shock protein HSP 90-alpha | / | 0.447 | |
| 1b6k | PI5 | Gag-Pol polyprotein | 3.4.23.16 | 0.446 | |
| 2wi1 | ZZ2 | Heat shock protein HSP 90-alpha | / | 0.445 | |
| 2b53 | D23 | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.444 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.444 | |
| 2vci | 2GJ | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 2vbd | V10 | Isopenicillin N synthase | 1.21.3.1 | 0.443 | |
| 1i58 | ADP | Chemotaxis protein CheA | 2.7.13.3 | 0.442 | |
| 2brb | PFQ | Serine/threonine-protein kinase Chk1 | 2.7.11.1 | 0.442 | |
| 3mla | JJZ | Probable nicotinate-nucleotide adenylyltransferase | / | 0.442 | |
| 2xx5 | 13N | ATP-dependent molecular chaperone HSP82 | / | 0.441 | |
| 3o6o | 94M | Heat shock protein 83 | / | 0.441 | |
| 1g1a | NAD | dTDP-glucose 4,6-dehydratase | / | 0.440 | |
| 4c3f | 7KW | Tyrosine-protein kinase Lck | 2.7.10.2 | 0.440 |