Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1uhlMEIRetinoic acid receptor RXR-beta

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1uhlMEIRetinoic acid receptor RXR-beta/1.000
1k749CRRetinoic acid receptor RXR-alpha/0.616
1fbyREARetinoic acid receptor RXR-alpha/0.603
3uvvREARetinoic acid receptor RXR-alpha/0.603
1fm69CRRetinoic acid receptor RXR-alpha/0.597
2p1v5TNRetinoic acid receptor RXR-alpha/0.583
1rdtL79Retinoic acid receptor RXR-alpha/0.581
2p1u4TNRetinoic acid receptor RXR-alpha/0.578
3oapREARetinoic acid receptor RXR-alpha/0.577
2p1t3TNRetinoic acid receptor RXR-alpha/0.573
1mznBM6Retinoic acid receptor RXR-alpha/0.566
4m8hR4MRetinoic acid receptor RXR-alpha/0.563
4k6i9RARetinoic acid receptor RXR-alpha/0.562
1xlsREARetinoic acid receptor RXR-alpha/0.559
1mvcBM6Retinoic acid receptor RXR-alpha/0.557
1xiuREARetinoic acid receptor RXR/0.556
4k4j1O8Retinoic acid receptor RXR-alpha/0.551
4m8e29VRetinoic acid receptor RXR-alpha/0.549
3h0a9RARetinoic acid receptor RXR-alpha/0.546
2aclREARetinoic acid receptor RXR-alpha/0.534
3fc6REARetinoic acid receptor RXR-alpha/0.534
3falREARetinoic acid receptor RXR-alpha/0.528
1fm99CRRetinoic acid receptor RXR-alpha/0.525
2vcmM11Isopenicillin N synthase1.21.3.10.490
2p15EZTEstrogen receptor/0.484
2ydoADNAdenosine receptor A2a/0.482
4j6dTESCytochrome P450 monooxygenase/0.482
3zkyWT4Isopenicillin N synthase1.21.3.10.479
2h55DZ8Heat shock protein HSP 90-alpha/0.478
3njoPYVAbscisic acid receptor PYR1/0.478
4qa0SHHHistone deacetylase 83.5.1.980.478
1bk0ACVIsopenicillin N synthase1.21.3.10.477
3p99LNPLanosterol 14-alpha-demethylase/0.477
3p9tTCLRepressor/0.477
2vbpVB1Isopenicillin N synthase1.21.3.10.476
3l0lHC3Nuclear receptor ROR-gamma/0.475
3lfcZ86Mitogen-activated protein kinase 14/0.475
1pkfEPDEpothilone C/D epoxidase1.140.474
3rfmCFFAdenosine receptor A2a/0.474
1og5SWFCytochrome P450 2C9/0.473
1uzwCDHIsopenicillin N synthase1.21.3.10.473
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.473
3oafOAGDihydrofolate reductase1.5.1.30.473
4j6cSTRCytochrome P450 monooxygenase/0.471
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.470
1hfqMOTDihydrofolate reductase1.5.1.30.469
1oc1ASVIsopenicillin N synthase1.21.3.10.469
1qiqACCIsopenicillin N synthase1.21.3.10.469
1dhfFOLDihydrofolate reductase1.5.1.30.468
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.468
4bfrJ82Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform2.7.1.1530.468
3byzH11Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.467
4h9614QDihydrofolate reductase1.5.1.30.467
4nb6444Nuclear receptor ROR-gamma/0.467
1q5dEPBEpothilone C/D epoxidase1.140.466
1w06W05Isopenicillin N synthase1.21.3.10.466
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.466
3zoiM2WIsopenicillin N synthase1.21.3.10.466
4uymVOR14-alpha sterol demethylase Cyp51B/0.466
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.465
4j6bPLOCytochrome P450 monooxygenase/0.465
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.465
3pwhZMAAdenosine receptor A2a/0.465
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.463
4jvmXDIEstrogen sulfotransferase2.8.2.40.463
4kne1CYDihydrofolate reductase1.5.1.30.463
2dqsTG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.462
2jb4A14Isopenicillin N synthase1.21.3.10.462
4ajwVWNPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform2.7.1.1530.462
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.462
1e7aPFLSerum albumin/0.461
1nzyBCA4-chlorobenzoyl coenzyme A dehalogenase3.8.1.70.461
1sojIBMcGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.461
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.461
4equG6ISerine/threonine-protein kinase 102.7.11.10.461
4p6wMOFGlucocorticoid receptor/0.461
4ruoBIVVitamin D3 receptor A/0.461
2y60M8FIsopenicillin N synthase1.21.3.10.460
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.460
4lsjLSJGlucocorticoid receptor/0.460
1ia3TQ5Dihydrofolate reductase1.5.1.30.459
1rd4L08Integrin alpha-L/0.459
1u2gAPRNAD(P) transhydrogenase subunit alpha part 11.6.1.20.459
1xdkREARetinoic acid receptor beta/0.459
2hw2RFPRifampin ADP-ribosyl transferase/0.459
5d7q4I5NAD-dependent protein deacetylase sirtuin-23.5.10.459
3reyXACAdenosine receptor A2a/0.459
2zbaZBATrichothecene 3-O-acetyltransferase/0.458
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.458
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.458
4j4vSVRNucleocapsid protein/0.458
5bn4ANPV-type ATP synthase alpha chain/0.458
1y2d4DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.457
2vbdV10Isopenicillin N synthase1.21.3.10.457
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.457
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.457
5d1bTSNHistone deacetylase 83.5.1.980.457
1hb3SCVIsopenicillin N synthase1.21.3.10.456
1obnASVIsopenicillin N synthase1.21.3.10.456
2w0bCMWLanosterol 14-alpha demethylase1.14.13.700.456
3tdaPN0Cytochrome P450 2D6/0.456
4l9q9TPSerum albumin/0.456
1blzACVIsopenicillin N synthase1.21.3.10.455
2y6fM9FIsopenicillin N synthase1.21.3.10.455
2ydvNECAdenosine receptor A2a/0.455
3cv9VDXVitamin D3 dihydroxylase/0.455
3qlwN22Dihydrofolate reductase1.5.1.30.455
4cd2FOLDihydrofolate reductase1.5.1.30.455
4jlj1NMDeoxycytidine kinase2.7.1.740.455
4xoqF42Coenzyme F420:L-glutamate ligase/0.455
3uzaT4GAdenosine receptor A2a/0.455
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
1so2666cGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.454
2drcMTXDihydrofolate reductase1.5.1.30.454
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.454
3h1vTK1Glucokinase2.7.1.20.454
4ap1NAPSteroid monooxygenase/0.454
4h9753SDihydrofolate reductase1.5.1.30.454
5dc5B3NHistone deacetylase 83.5.1.980.454
3qakUKAAdenosine receptor A2a/0.454
2w3vTOPDihydrofolate reductase/0.453
2x7hPFNProstaglandin reductase 310.453
3ar5TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.453
3ar6TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.453
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.453
3qly55VUncharacterized protein/0.453
3u8hBHPPhospholipase A2, membrane associated/0.453
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.453
1tsdF89Thymidylate synthase/0.452
2gpvOHTEstrogen-related receptor gamma/0.452
2iviACWIsopenicillin N synthase1.21.3.10.452
2vxoXMPGMP synthase [glutamine-hydrolyzing]6.3.5.20.452
3cd2MTXDihydrofolate reductase1.5.1.30.452
3eigMTXDihydrofolate reductase1.5.1.30.452
3qm4PN0Cytochrome P450 2D6/0.452
3zkuHCVIsopenicillin N synthase1.21.3.10.452
1uycPU7Heat shock protein HSP 90-alpha/0.451
1uydPU8Heat shock protein HSP 90-alpha/0.451
2chw039Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
2pnuENMAndrogen receptor/0.451
3nr4PYVAbscisic acid receptor PYL2/0.451
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.451
3zze6XPHepatocyte growth factor receptor2.7.10.10.451
4c3yANB3-ketosteroid dehydrogenase/0.451
1ivrCBAAspartate aminotransferase, mitochondrial2.6.1.10.450
1ysx4EBSerum albumin/0.450
2agvTG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.450
2bu9HFVIsopenicillin N synthase1.21.3.10.450
2jc6QPPCalcium/calmodulin-dependent protein kinase type 1D2.7.11.170.450
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.450
2wo7ASVIsopenicillin N synthase1.21.3.10.450
3lalKRVGag-Pol polyprotein2.7.7.490.450
3lu8IQXSerum albumin/0.450
3p3zP3ZPutative cytochrome P450/0.450
3qlrQLRDihydrofolate reductase1.5.1.30.450
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.450
3t14FADSulfide-quinone reductase/0.450
3zsh469Mitogen-activated protein kinase 14/0.450
4fex0TOAminoglycoside 3'-phosphotransferase AphA1-IAB/0.450
4gg50J3Hepatocyte growth factor receptor2.7.10.10.450
4hyf1AKTankyrase-22.4.2.300.450
4pnmNU1Tankyrase-22.4.2.300.450
3ctj320Hepatocyte growth factor receptor2.7.10.10.449
4b1fKRHGlutamate racemase/0.449
4l9kEHFSerum albumin/0.449
3uzcT4EAdenosine receptor A2a/0.449
1rf7DHFDihydrofolate reductase1.5.1.30.448
1uykPUXHeat shock protein HSP 90-alpha/0.448
2b03TUDPhospholipase A2, major isoenzyme3.1.1.40.448
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
2hasC3OVitamin D3 receptor/0.448
2puiADPMethylthioribose kinase2.7.1.1000.448
3d3eD3ECorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
3l08ZIGPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.448
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.448
1s9qOHTEstrogen-related receptor gamma/0.447
2hb7O1CVitamin D3 receptor/0.447
2o7pNAPRiboflavin biosynthesis protein RibD/0.447
3ar7TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.447
3csdEMOPutative ketoacyl reductase1.3.10.447
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.447
3oezSTIProto-oncogene tyrosine-protein kinase Src2.7.10.20.447
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.447
1m9m6NINitric oxide synthase, endothelial1.14.13.390.446
1nceCB3Thymidylate synthase/0.446
1vj3TABDihydrofolate reductase1.5.1.30.446
2fhjMFNFormylmethanofuran--tetrahydromethanopterin formyltransferase2.3.1.1010.446
2fm0M98cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.446
2fzhDH1Dihydrofolate reductase1.5.1.30.446
2pulACPMethylthioribose kinase2.7.1.1000.446
2qd5CHDFerrochelatase, mitochondrial4.99.1.10.446
2wpwACOOrf14/0.446
3fznD7KBenzoylformate decarboxylase4.1.1.70.446
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.446
4bfvZVVPantothenate kinase2.7.1.330.446
4e6a0O9Mitogen-activated protein kinase 14/0.446
4g95OAGDihydrofolate reductase1.5.1.30.446
1tdrMTXDihydrofolate reductase1.5.1.30.445
2b01TUDPhospholipase A2, major isoenzyme3.1.1.40.445
3adaNADSubunit alpha of sarocosine oxidase/0.445
3ua506XCytochrome P450 2B61.14.130.445
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.445
4dm6TTBRetinoic acid receptor beta/0.445
1uy7PU4Heat shock protein HSP 90-alpha/0.444
1vruAAPGag-Pol polyprotein2.7.7.490.444
2h42VIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.444
2jedLG8Protein kinase C theta type2.7.11.130.444
2jj2ANPATP synthase subunit beta, mitochondrial3.6.3.140.444
2zlcVDXVitamin D3 receptor/0.444
3vtdTKDVitamin D3 receptor/0.444
4c1iEH9cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.444
4nc3ERM5-hydroxytryptamine receptor 2B/0.444
1fcx184Retinoic acid receptor gamma/0.443
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
2hamC33Vitamin D3 receptor/0.443
2imkGTXAGAP009194-PA/0.443
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.443
2ze2T27Gag-Pol polyprotein2.7.7.490.443
3s79ASDAromatase1.14.14.140.443
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
4fnyI3KALK tyrosine kinase receptor2.7.10.10.443
4h4m494Gag-Pol polyprotein2.7.7.490.443
4h9814QUncharacterized protein/0.443
4hw319GInduced myeloid leukemia cell differentiation protein Mcl-1/0.443
5iu4ZMAAdenosine receptor A2a/0.443
1lhwESMSex hormone-binding globulin/0.442
1xp9AIJEstrogen receptor/0.442
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.442
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
2g2hP16Tyrosine-protein kinase ABL12.7.10.20.442
2hm9TRRDihydrofolate reductase1.5.1.30.442
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.442
2rqfJH3Hemolymph juvenile hormone binding protein/0.442
2uxoTACHTH-type transcriptional regulator TtgR/0.442
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
3tubFPUTyrosine-protein kinase SYK2.7.10.20.442
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.442
4dvq1CACytochrome P450 11B2, mitochondrial1.14.15.40.442
4fewPP2Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.442
4ia1BIVVitamin D3 receptor A/0.442
4ia7BIVVitamin D3 receptor A/0.442
4iui1GQEstrogen receptor/0.442
4mfb29TGag-Pol polyprotein2.7.7.490.442
4qa2SHHHistone deacetylase 83.5.1.980.442
5iu86DZAdenosine receptor A2a/0.442
1aoeGW3Dihydrofolate reductase1.5.1.30.441
1dr3HBIDihydrofolate reductase1.5.1.30.441
1ly3COGDihydrofolate reductase1.5.1.30.441
1s6qTPBGag-Pol polyprotein2.7.7.490.441
3a0iAJIGlucokinase2.7.1.20.441
3eek53SUncharacterized protein/0.441
3ipq965Oxysterols receptor LXR-alpha/0.441
3is9AC7Gag-Pol polyprotein2.7.7.490.441
3kytHC2Nuclear receptor ROR-gamma/0.441
3s3vTOPDihydrofolate reductase1.5.1.30.441
3t2yFADSulfide-quinone reductase/0.441
4elb34RDihydrofolate reductase/0.441
4iw8KN3Estrogen receptor/0.441
4l8u9AZSerum albumin/0.441
4o71CPBBromodomain-containing protein 4/0.441
1exa394Retinoic acid receptor gamma/0.440
1hb1OCVIsopenicillin N synthase1.21.3.10.440
1xngDNDNH(3)-dependent NAD(+) synthetase6.3.1.50.440
2azyCHDPhospholipase A2, major isoenzyme3.1.1.40.440
2fziDH3Dihydrofolate reductase1.5.1.30.440
2vzmNRBCytochrome P450 monooxygenase PikC/0.440
3a1l2CCCytochrome P450/0.440
3new3NEMitogen-activated protein kinase 14/0.440
3qaqQAQPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.440
3qdd94MHeat shock protein HSP 90-alpha/0.440
4aosNAPSteroid monooxygenase/0.440
4eevL1XHepatocyte growth factor receptor2.7.10.10.440
4o761M3Bromodomain-containing protein 4/0.440