2.710 Å
X-ray
2012-05-30
| Name: | Aminoglycoside 3'-phosphotransferase AphA1-IAB |
|---|---|
| ID: | B0VD92_ACIBY |
| AC: | B0VD92 |
| Organism: | Acinetobacter baumannii |
| Reign: | Bacteria |
| TaxID: | 509173 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 96 % |
| B | 4 % |
| B-Factor: | 53.944 |
|---|---|
| Number of residues: | 28 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.881 | 715.500 |
| % Hydrophobic | % Polar |
|---|---|
| 44.81 | 55.19 |
| According to VolSite | |

| HET Code: | 0TO |
|---|---|
| Formula: | C16H14ClN3O2 |
| Molecular weight: | 315.754 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 58.79 % |
| Polar Surface area: | 56.27 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 3 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -28.2024 | -59.9142 | 17.4258 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C17 | CD1 | ILE- 40 | 3.6 | 0 | Hydrophobic |
| C7 | CB | PHE- 53 | 4.37 | 0 | Hydrophobic |
| C19 | CG | LYS- 55 | 3.54 | 0 | Hydrophobic |
| CL | CD1 | LEU- 72 | 3.68 | 0 | Hydrophobic |
| CL | CG | PRO- 82 | 3.91 | 0 | Hydrophobic |
| CL | CG2 | THR- 98 | 3.53 | 0 | Hydrophobic |
| N9 | N | ILE- 101 | 3.06 | 148.39 | H-Bond (Protein Donor) |
| C14 | CG2 | THR- 105 | 3.49 | 0 | Hydrophobic |
| C15 | CD1 | ILE- 205 | 3.87 | 0 | Hydrophobic |
| C14 | CD1 | ILE- 215 | 3.65 | 0 | Hydrophobic |
| C3 | CD1 | ILE- 215 | 3.47 | 0 | Hydrophobic |