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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4b79 NAD Probable short-chain dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4b79 NADProbable short-chain dehydrogenase / 1.253
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.995
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.957
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.952
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.951
3p19 NDPPutative blue fluorescent protein / 0.944
3wds NADNADH-dependent quinuclidinone reductase / 0.942
1x7h NDPPutative ketoacyl reductase 1.3.1 0.938
3ak4 NADNADH-dependent quinuclidinone reductase / 0.934
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.933
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.932
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.930
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.927
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.923
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.923
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.922
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.921
1x7g NAPPutative ketoacyl reductase 1.3.1 0.921
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.919
4kwh NAPReductase homolog / 0.919
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.911
2dte NAIGlucose 1-dehydrogenase related protein / 0.909
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.909
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.905
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.903
4dbz NDPPutative ketoacyl reductase 1.3.1 0.903
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.903
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.896
4bmv NAPShort-chain dehydrogenase / 0.894
3o26 NDPSalutaridine reductase / 0.890
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.885
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.882
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.871
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.867
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.867
4j7x NAPSepiapterin reductase 1.1.1.153 0.867
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.864
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.863
4j7u NAPSepiapterin reductase 1.1.1.153 0.863
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.862
4fn4 NADShort chain dehydrogenase / 0.858
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.857
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.856
2wsb NADGalactitol dehydrogenase / 0.855
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.855
1w4z NAPPutative ketoacyl reductase 1.3.1 0.854
3ai2 NDPNADPH-sorbose reductase / 0.854
4yag NAIC alpha-dehydrogenase / 0.854
3ai3 NDPNADPH-sorbose reductase / 0.852
2c29 NAPDihydroflavonol 4-reductase / 0.845
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.845
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.839
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.838
3tsc NADUncharacterized protein / 0.836
1sny NAPLD36273p / 0.835
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.835
4qec NAPElxO / 0.834
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.832
3r3s NADPutative oxidoreductase / 0.830
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.830
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.829
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.827
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.824
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.823
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.823
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.822
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.820
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.819
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.819
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.819
1oaa NAPSepiapterin reductase 1.1.1.153 0.818
2jah NDPClavaldehyde dehydrogenase / 0.816
3qrw NDPPutative ketoacyl reductase 1.3.1 0.815
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.814
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.812
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.811
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.810
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.810
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.810
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.809
1pr9 NAPL-xylulose reductase 1.1.1.10 0.807
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.802
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.801
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.798
3sx2 NADUncharacterized protein / 0.798
1ae1 NAPTropinone reductase 1 / 0.796
3d3w NAPL-xylulose reductase 1.1.1.10 0.796
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.796
3sju NDPKeto reductase / 0.795
4yai NAIC alpha-dehydrogenase / 0.795
1ipe NDPTropinone reductase 2 1.1.1.236 0.792
2yut NAPPutative short-chain oxidoreductase / 0.792
4hwk NAPSepiapterin reductase 1.1.1.153 0.791
3geg NADShort-chain dehydrogenase/reductase SDR / 0.790
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.788
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.788
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.788
2wdz NADGalactitol dehydrogenase / 0.787
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.787
4qed NAPElxO / 0.787
5jla NADPutative short-chain dehydrogenase/reductase / 0.787
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.786
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.784
3tn7 NJPShort-chain alcohol dehydrogenase / 0.784
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.783
3uce NDPDehydrogenase / 0.783
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.782
3l77 NJPShort-chain alcohol dehydrogenase / 0.782
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.781
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.781
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.781
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.780
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.779
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.777
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.777
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.776
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.770
5jyd NADShort chain dehydrogenase / 0.768
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.766
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.766
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.766
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.765
4wec NADShort chain dehydrogenase / 0.763
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.762
4hxy NDPPlm1 / 0.762
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.760
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.759
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.759
3orf NADDihydropteridine reductase 1.5.1.34 0.759
4u7w NDPMxaA / 0.757
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.756
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.756
1xkq NDPUncharacterized protein / 0.755
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.755
2bd0 NAPSepiapterin reductase / 0.754
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.753
2p5y NADUDP-glucose 4-epimerase / 0.753
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.752
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.752
1zem NADXylitol dehydrogenase / 0.751
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.751
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.750
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.750
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.750
3bmo NAPPteridine reductase / 0.749
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.748
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.747
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.747
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.747
2bfo NDPPteridine reductase 1 1.5.1.33 0.746
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.746
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.746
3tox NAPPutative oxidoreductase / 0.746
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.743
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.743
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.742
3a4v NADNDP-sugar epimerase / 0.742
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.741
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.739
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.737
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.736
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.736
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.735
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.735
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.734
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.734
3aw9 NADNAD-dependent epimerase/dehydratase / 0.732
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.731
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.730
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.729
1sby NADAlcohol dehydrogenase 1.1.1.1 0.728
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.728
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.728
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.728
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.728
3mje NDPAmphB / 0.727
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.726
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.726
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.725
4eso NAPPutative oxidoreductase / 0.725
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.724
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.724
2yy7 NADL-threonine dehydrogenase / 0.723
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.722
3icp NADNAD-dependent epimerase/dehydratase / 0.722
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.722
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.720
3ko8 NADNAD-dependent epimerase/dehydratase / 0.719
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.719
2p5u NADUDP-glucose 4-epimerase / 0.718
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.717
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.716
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.716
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.713
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.713
5d2e NAPMlnE / 0.713
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.712
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.712
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.712
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.711
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.711
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.711
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.709
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.708
3f1k NAPUncharacterized oxidoreductase YciK 1 0.708
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.707
3wmx NADNAD dependent epimerase/dehydratase / 0.707
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.706
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.705
3ajr NADNDP-sugar epimerase / 0.705
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.705
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.704
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.704
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.703
3s55 NADPutative short-chain dehydrogenase/reductase / 0.703
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.702
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.701
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.701
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.701
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.700
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.700
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.699
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.699
3a9w NADNDP-sugar epimerase / 0.698
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.695
4egb NADdTDP-glucose 4,6-dehydratase / 0.695
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.693
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.692
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.691
1iy8 NADLevodione reductase / 0.691
4xgi NADGlutamate dehydrogenase / 0.691
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.690
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.689
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.688
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.687
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.684
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.682
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.682
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.681
4o1m NADEnoyl-acyl carrier reductase / 0.681
1i36 NAPConserved protein / 0.680
4idg NADPutative UDP-glucose 4-epimerase / 0.680
5lc1 NADL-threonine 3-dehydrogenase / 0.680
1ek5 NADUDP-glucose 4-epimerase / 0.679
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.679
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.678
1vrw NAIEnoyl-ACP reductase / 0.677
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.677
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.674
1i3l NADUDP-glucose 4-epimerase / 0.674
1g1a NADdTDP-glucose 4,6-dehydratase / 0.672
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.672
3a1n NADNDP-sugar epimerase / 0.670
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.670
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.667
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.665
1wnt NAPL-xylulose reductase 1.1.1.10 0.661
4tvb NADHomospermidine synthase 2.5.1.44 0.661
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.660
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.657
2rcy NAPPyrroline-5-carboxylate reductase / 0.656
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.655
3zhb NAPPutative dehydrogenase / 0.655
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.655
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.654
1bws NDPGDP-L-fucose synthase / 0.653
2c0c NAPProstaglandin reductase 3 1 0.653
2z1m NDPGDP-mannose 4,6-dehydratase / 0.653
1bvr NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
4y9d NAIC alpha-dehydrogenase / 0.651
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.650
3hwr NDP2-dehydropantoate 2-reductase / 0.650
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.650