2.000 Å
X-ray
2012-04-25
Name: | Trans-2-enoyl-CoA reductase [NADH] |
---|---|
ID: | FABV_CLOAB |
AC: | Q97LU2 |
Organism: | Clostridium acetobutylicum |
Reign: | Bacteria |
TaxID: | 272562 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 19.448 |
---|---|
Number of residues: | 56 |
Including | |
Standard Amino Acids: | 52 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: | NA |
Ligandability | Volume (Å3) |
---|---|
0.640 | 486.000 |
% Hydrophobic | % Polar |
---|---|
46.53 | 53.47 |
According to VolSite |
HET Code: | NAI |
---|---|
Formula: | C21H27N7O14P2 |
Molecular weight: | 663.425 g/mol |
DrugBank ID: | DB00157 |
Buried Surface Area: | 75.44 % |
Polar Surface area: | 342.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 19 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
40.9402 | 19.0062 | 21.6471 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | OG | SER- 49 | 2.54 | 151.74 | H-Bond (Ligand Donor) |
O2B | OG | SER- 49 | 3.19 | 165.31 | H-Bond (Ligand Donor) |
O3B | N | SER- 49 | 3.26 | 144.78 | H-Bond (Protein Donor) |
O1A | OG | SER- 50 | 2.93 | 173.9 | H-Bond (Protein Donor) |
O2N | N | PHE- 52 | 2.82 | 157.15 | H-Bond (Protein Donor) |
C1D | CD2 | PHE- 52 | 4.5 | 0 | Hydrophobic |
C4N | CE2 | PHE- 52 | 3.66 | 0 | Hydrophobic |
O2B | N | TYR- 74 | 3.21 | 142.52 | H-Bond (Protein Donor) |
N6A | OD1 | ASP- 111 | 3.09 | 172.51 | H-Bond (Ligand Donor) |
N1A | N | ALA- 112 | 2.94 | 179.15 | H-Bond (Protein Donor) |
C5D | CB | SER- 138 | 4.38 | 0 | Hydrophobic |
C5B | CB | ALA- 140 | 3.95 | 0 | Hydrophobic |
C3D | CB | ALA- 140 | 4.24 | 0 | Hydrophobic |
O4B | N | ALA- 140 | 3.3 | 169.17 | H-Bond (Protein Donor) |
C3D | CE | MET- 196 | 4.31 | 0 | Hydrophobic |
C4D | CB | TYR- 223 | 4.17 | 0 | Hydrophobic |
C1D | CB | TYR- 223 | 3.9 | 0 | Hydrophobic |
C4N | CD1 | TYR- 225 | 4.04 | 0 | Hydrophobic |
O3D | NZ | LYS- 244 | 2.97 | 129.08 | H-Bond (Protein Donor) |
O2D | NZ | LYS- 244 | 2.86 | 151.53 | H-Bond (Protein Donor) |
C4N | CB | ASN- 271 | 4.42 | 0 | Hydrophobic |
O7N | N | LEU- 274 | 3.15 | 164.23 | H-Bond (Protein Donor) |
O1N | OG1 | THR- 276 | 2.62 | 169.53 | H-Bond (Protein Donor) |