Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3awi FAD tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3awi FADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 1.5 1.161
3pvc FADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC / 0.928
3sgl FADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC / 0.892
3ad9 FADSubunit beta of sarcosine oxidase / 0.770
1kif FADD-amino-acid oxidase 1.4.3.3 0.748
4c3y FAD3-ketosteroid dehydrogenase / 0.748
5g3t FDAFlavin-dependent L-tryptophan oxidase VioA / 0.746
2yr5 FADPhenylalanine 2-monooxygenase precursor 1.13.12.9 0.727
3k7t FAD6-hydroxy-L-nicotine oxidase / 0.723
1c0l FADD-amino-acid oxidase 1.4.3.3 0.722
3cty FADProbable thioredoxin reductase / 0.718
3cgd FADCoenzyme A disulfide reductase / 0.716
2yg7 FADPutrescine oxidase / 0.712
3cuk FADD-amino-acid oxidase 1.4.3.3 0.712
3dme FADPutative conserved exported protein / 0.711
4cnk FADL-amino acid oxidase / 0.710
2fje FADAdenylylsulfate reductase, subunit A (AprA) / 0.707
4x9m FADUncharacterized protein MG039 homolog / 0.705
1d4d FADFumarate reductase flavoprotein subunit 1.3.5.4 0.704
2cul FADGidA-related protein / 0.702
2fja FADAdenylylsulfate reductase, subunit A (AprA) / 0.701
4xwz FADFructosyl amine:oxygen oxidoreductase / 0.698
1c0k FADD-amino-acid oxidase 1.4.3.3 0.697
1jnr FADAdenylylsulfate reductase, subunit A (AprA) / 0.697
5hhf FDAUDP-galactopyranose mutase / 0.697
2fjd SFDAdenylylsulfate reductase, subunit A (AprA) / 0.696
4hsu FADLysine-specific histone demethylase 1B 1 0.696
3nyc FADFAD-dependent catabolic D-arginine dehydrogenase DauA / 0.695
3kkj FADRenalase / 0.694
3k7m FAD6-hydroxy-L-nicotine oxidase / 0.693
2e1m FADL-glutamate oxidase / 0.692
3cgc FADCoenzyme A disulfide reductase / 0.692
3m0o FADMonomeric sarcosine oxidase 1.5.3.1 0.692
3axb FADPutative oxidoreductase / 0.691
3cgb FADCoenzyme A disulfide reductase / 0.690
3t2y FADSulfide-quinone reductase / 0.689
1e1n FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.688
3lzw FADFerredoxin--NADP reductase 2 1.18.1.2 0.688
3t14 FADSulfide-quinone reductase / 0.685
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.685
1gra FADGlutathione reductase, mitochondrial 1.8.1.7 0.684
2fjb SFDAdenylylsulfate reductase, subunit A (AprA) / 0.684
3gsi FADDimethylglycine oxidase 1.5.3.10 0.684
3sz0 FADSulfide-quinone reductase / 0.684
1f8w FADNADH peroxidase 1.11.1.1 0.683
1jnz FADAdenylylsulfate reductase, subunit A (AprA) / 0.682
3nta FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.681
1grg FADGlutathione reductase, mitochondrial 1.8.1.7 0.680
1zk7 FADMercuric reductase 1.16.1.1 0.680
1zx9 FADMercuric reductase 1.16.1.1 0.680
3rha FDAPutrescine oxidase / 0.680
1gre FADGlutathione reductase, mitochondrial 1.8.1.7 0.679
1grh FADGlutathione reductase, mitochondrial 1.8.1.7 0.679
3djg FADGlutathione reductase, mitochondrial 1.8.1.7 0.679
4at0 FADPossible succinate dehydrogenase / 0.679
4cnj FADL-amino acid oxidase / 0.679
2yg3 FADPutrescine oxidase / 0.678
3cge FADCoenzyme A disulfide reductase / 0.678
3kve FADL-amino-acid oxidase / 0.678
3m12 FADMonomeric sarcosine oxidase 1.5.3.1 0.678
3vqr FADPutative oxidoreductase / 0.678
4wct FADFructosyl amine:oxygen oxidoreductase / 0.678
5j60 FADThioredoxin reductase / 0.678
1dnc FADGlutathione reductase, mitochondrial 1.8.1.7 0.677
1gsn FADGlutathione reductase, mitochondrial 1.8.1.7 0.677
2cvj FADThioredoxin reductase related protein / 0.677
4gdp FADPolyamine oxidase FMS1 / 0.677
5i39 FADL-amino acid deaminase / 0.677
1rp0 AHZThiamine thiazole synthase, chloroplastic / 0.676
2dki FAD3-hydroxybenzoate 4-monooxygenase 1.14.13.23 0.674
1ng4 FADGlycine oxidase 1.4.3.19 0.673
1qo8 FADFumarate reductase flavoprotein subunit / 0.673
2yg5 FADPutrescine oxidase / 0.673
3ukl FADUDP-galactopyranose mutase / 0.673
1d4c FADFumarate reductase flavoprotein subunit 1.3.5.4 0.672
1f8r FADL-amino-acid oxidase 1.4.3.2 0.669
2iw5 FADLysine-specific histone demethylase 1A 1 0.667
4ysh FADGlycine oxidase / 0.667
2jb1 FADL-amino acid oxidase / 0.666
3nt6 FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.666
4cy8 FDA2-hydroxybiphenyl-3-monooxygenase / 0.666
3grs FADGlutathione reductase, mitochondrial 1.8.1.7 0.665
3zdn FADMonoamine oxidase N 1.4.3.4 0.665
4i58 FADCyclohexylamine Oxidase / 0.665
4yjd FADD-amino-acid oxidase 1.4.3.3 0.665
1y56 FAD382aa long hypothetical sarcosine oxidase / 0.664
4fwe FADLysine-specific histone demethylase 1B 1 0.663
1cc2 FADCholesterol oxidase 1.1.3.6 0.662
1ryi FADGlycine oxidase 1.4.3.19 0.662
2yg4 FADPutrescine oxidase / 0.662
3ge6 FMNNitroreductase / 0.661
1bwc FADGlutathione reductase, mitochondrial 1.8.1.7 0.660
5ez7 FADProbable FAD-dependent oxidoreductase PA4991 / 0.660
5hxw FADL-amino acid deaminase / 0.660
4gur FADLysine-specific histone demethylase 1B 1 0.659
3dk9 FADGlutathione reductase, mitochondrial 1.8.1.7 0.658
1k4q FADGlutathione reductase, mitochondrial 1.8.1.7 0.657
2x8h FADThioredoxin glutathione reductase / 0.657
3ka7 FADPutative oxidoreductase / 0.657
1e6e FADNADPH:adrenodoxin oxidoreductase, mitochondrial 1.18.1.6 0.656
3syi FADSulfide-quinone reductase / 0.656
1tde FADThioredoxin reductase 1.8.1.9 0.655
1ve9 FADD-amino-acid oxidase 1.4.3.3 0.655
1cf3 FADGlucose oxidase 1.1.3.4 0.653
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.653
1trb FADThioredoxin reductase 1.8.1.9 0.653
3ukk FADUDP-galactopyranose mutase / 0.653
1tdk FADL-amino-acid oxidase 1.4.3.2 0.652
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.652
3m13 FADMonomeric sarcosine oxidase 1.5.3.1 0.652
2vq7 FADPutative flavin-containing monooxygenase / 0.651
2jae FADL-amino acid oxidase / 0.650
2xlp FADPutative flavin-containing monooxygenase / 0.650
4em4 FADCoenzyme A disulfide reductase / 0.650
4mok FADPyranose 2-oxidase / 0.650
4rsl FADFructosyl peptide oxidase / 0.650