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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ztu NAD D(-)-3-hydroxybutyrate dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 1.109
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.967
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.905
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.903
2dte NAIGlucose 1-dehydrogenase related protein / 0.870
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.861
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.843
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.832
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.819
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.815
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.814
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.807
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.805
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.796
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.795
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.786
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.786
4dbz NDPPutative ketoacyl reductase 1.3.1 0.786
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.785
3p19 NDPPutative blue fluorescent protein / 0.785
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.784
3qrw NDPPutative ketoacyl reductase 1.3.1 0.784
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.784
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.782
1x7g NAPPutative ketoacyl reductase 1.3.1 0.782
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.782
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.780
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.779
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.779
3ai3 NDPNADPH-sorbose reductase / 0.778
4kwh NAPReductase homolog / 0.776
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.775
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.775
1ipe NDPTropinone reductase 2 1.1.1.236 0.774
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.772
3ak4 NADNADH-dependent quinuclidinone reductase / 0.770
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.770
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.769
2bd0 NAPSepiapterin reductase / 0.769
4yai NAIC alpha-dehydrogenase / 0.769
2wdz NADGalactitol dehydrogenase / 0.768
1g1a NADdTDP-glucose 4,6-dehydratase / 0.766
3ai2 NDPNADPH-sorbose reductase / 0.762
1ae1 NAPTropinone reductase 1 / 0.760
2wsb NADGalactitol dehydrogenase / 0.760
3o26 NDPSalutaridine reductase / 0.760
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.760
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.759
3wds NADNADH-dependent quinuclidinone reductase / 0.757
4yag NAIC alpha-dehydrogenase / 0.757
1pr9 NAPL-xylulose reductase 1.1.1.10 0.756
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.756
4b79 NADProbable short-chain dehydrogenase / 0.756
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.756
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.755
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.754
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.754
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.754
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.754
4hwk NAPSepiapterin reductase 1.1.1.153 0.754
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.752
2p5y NADUDP-glucose 4-epimerase / 0.752
4u7w NDPMxaA / 0.752
1oaa NAPSepiapterin reductase 1.1.1.153 0.751
2c29 NAPDihydroflavonol 4-reductase / 0.750
4j7u NAPSepiapterin reductase 1.1.1.153 0.749
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.748
5jla NADPutative short-chain dehydrogenase/reductase / 0.748
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.746
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.746
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.745
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.744
1x7h NDPPutative ketoacyl reductase 1.3.1 0.743
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.743
3tn7 NJPShort-chain alcohol dehydrogenase / 0.743
4hxy NDPPlm1 / 0.743
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.741
3d3w NAPL-xylulose reductase 1.1.1.10 0.741
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.741
1sny NAPLD36273p / 0.740
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.740
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.739
4bmv NAPShort-chain dehydrogenase / 0.739
1zem NADXylitol dehydrogenase / 0.738
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.737
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.734
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.733
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.733
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.732
3s55 NADPutative short-chain dehydrogenase/reductase / 0.732
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.731
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.730
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.730
4j7x NAPSepiapterin reductase 1.1.1.153 0.730
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.729
3geg NADShort-chain dehydrogenase/reductase SDR / 0.729
3uce NDPDehydrogenase / 0.729
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.728
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.728
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.728
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.727
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.726
2jah NDPClavaldehyde dehydrogenase / 0.726
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.726
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.725
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.723
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.722
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.722
3ko8 NADNAD-dependent epimerase/dehydratase / 0.721
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.720
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.720
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.720
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.719
3bmo NAPPteridine reductase / 0.717
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.717
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.717
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.717
5d2e NAPMlnE / 0.716
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.715
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.715
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.714
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.713
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.712
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.712
4wec NADShort chain dehydrogenase / 0.712
3r3s NADPutative oxidoreductase / 0.711
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.710
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.710
3sju NDPKeto reductase / 0.710
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.710
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.710
5jyd NADShort chain dehydrogenase / 0.710
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.709
3mje NDPAmphB / 0.709
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.709
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.709
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.709
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.707
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.706
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.706
1v35 NAIEnoyl-ACP reductase / 0.706
1iy8 NADLevodione reductase / 0.705
1xkq NDPUncharacterized protein / 0.705
3aw9 NADNAD-dependent epimerase/dehydratase / 0.705
3icp NADNAD-dependent epimerase/dehydratase / 0.705
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.704
4clo NAPPteridine reductase / 0.704
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.704
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.704
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.704
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.703
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.703
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.703
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.702
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.701
3tsc NADUncharacterized protein / 0.701
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.701
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.699
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.699
3tox NAPPutative oxidoreductase / 0.699
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.697
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.697
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.696
1w4z NAPPutative ketoacyl reductase 1.3.1 0.695
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.693
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.693
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.692
2z1m NDPGDP-mannose 4,6-dehydratase / 0.691
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.689
1vrw NAIEnoyl-ACP reductase / 0.689
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.689
4qed NAPElxO / 0.689
4fn4 NADShort chain dehydrogenase / 0.688
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.687
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.686
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.686
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.685
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.684
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.684
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.684
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.683
1orr NADCDP-paratose 2-epimerase / 0.683
1sby NADAlcohol dehydrogenase 1.1.1.1 0.683
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.682
2bgl NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.681
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.681
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.680
2yy7 NADL-threonine dehydrogenase / 0.679
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.678
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.678
3l77 NJPShort-chain alcohol dehydrogenase / 0.678
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.675
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.674
4qec NAPElxO / 0.674
2yut NAPPutative short-chain oxidoreductase / 0.673
3f1k NAPUncharacterized oxidoreductase YciK 1 0.673
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.672
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.672
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.672
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.672
4egb NADdTDP-glucose 4,6-dehydratase / 0.671
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.671
2nq8 ZIDEnoyl-ACP reductase / 0.670
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.670
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
4ihi NADProbable pyrroline-5-carboxylate dehydrogenase RocA / 0.669
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.668
2p9g NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.668
3h4v NAPPteridine reductase 1 1.5.1.33 0.668
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.667
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.667
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
2bfo NDPPteridine reductase 1 1.5.1.33 0.665
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.665
5lc1 NADL-threonine 3-dehydrogenase / 0.663
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.662
1zid ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
3orf NADDihydropteridine reductase 1.5.1.34 0.662
1bws NDPGDP-L-fucose synthase / 0.661
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.661
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.661
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.659
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.658
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.658
3u4c NDPNADPH-dependent reductase BacG / 0.658
1lsj NADHydroxyacyl-coenzyme A dehydrogenase, mitochondrial 1.1.1.35 0.657
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.657
2p5u NADUDP-glucose 4-epimerase / 0.656
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.655
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.655
4o1m NADEnoyl-acyl carrier reductase / 0.655
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.653
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.653
1ek5 NADUDP-glucose 4-epimerase / 0.652
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.652
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.651
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.651
2p9c NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.650
3wmx NADNAD dependent epimerase/dehydratase / 0.650