sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3t2s | AGS | Heat shock protein HSP 90-alpha |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3t2s | AGS | Heat shock protein HSP 90-alpha | / | 1.000 | |
| 3t1k | ANP | Heat shock protein HSP 90-alpha | / | 0.711 | |
| 3t10 | ACP | Heat shock protein HSP 90-alpha | / | 0.645 | |
| 2yef | ANP | Heat shock protein HSP 90-alpha | / | 0.640 | |
| 2xk2 | ADP | Heat shock protein HSP 90-alpha | / | 0.637 | |
| 1byq | ADP | Heat shock protein HSP 90-alpha | / | 0.630 | |
| 4gqt | ADP | Heat shock protein 90 | / | 0.610 | |
| 4bqj | XKL | Heat shock protein HSP 90-alpha | / | 0.605 | |
| 3r4p | FU7 | Heat shock protein HSP 90-alpha | / | 0.601 | |
| 4xcj | ADP | Heat shock cognate 90 kDa protein | / | 0.600 | |
| 2xcm | ADP | Cytosolic heat shock protein 90 | / | 0.584 | |
| 4jql | VJ6 | Heat shock protein HSP 90-alpha | / | 0.580 | |
| 2qg0 | A94 | Heat shock protein HSP 90-alpha | / | 0.571 | |
| 2byh | 2D7 | Heat shock protein HSP 90-alpha | / | 0.570 | |
| 3vha | VHA | Heat shock protein HSP 90-alpha | / | 0.569 | |
| 2byi | 2DD | Heat shock protein HSP 90-alpha | / | 0.567 | |
| 1amw | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.560 | |
| 3hhu | 819 | Heat shock protein HSP 90-alpha | / | 0.560 | |
| 2yeg | XQG | Heat shock protein HSP 90-alpha | / | 0.556 | |
| 3rlq | 3RQ | Heat shock protein HSP 90-alpha | / | 0.556 | |
| 4fcr | 0TM | Heat shock protein HSP 90-alpha | / | 0.556 | |
| 1u2o | NEC | Endoplasmin | / | 0.554 | |
| 3r4o | FU3 | Heat shock protein HSP 90-alpha | / | 0.554 | |
| 4egi | B2J | Heat shock protein HSP 90-alpha | / | 0.554 | |
| 3ekr | PY9 | Heat shock protein HSP 90-alpha | / | 0.553 | |
| 5f5r | ANP | Heat shock protein 75 kDa, mitochondrial | / | 0.552 | |
| 1u0z | RDC | Endoplasmin | / | 0.550 | |
| 2xx2 | 13C | ATP-dependent molecular chaperone HSP82 | / | 0.550 | |
| 1uy7 | PU4 | Heat shock protein HSP 90-alpha | / | 0.547 | |
| 2wep | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.543 | |
| 3ft8 | MOJ | Heat shock protein HSP 90-alpha | / | 0.541 | |
| 1osf | KOS | Heat shock protein HSP 90-alpha | / | 0.540 | |
| 1qy5 | NEC | Endoplasmin | / | 0.539 | |
| 1ysz | NEC | Endoplasmin | / | 0.539 | |
| 2vw5 | BC6 | ATP-dependent molecular chaperone HSP82 | / | 0.539 | |
| 3t0z | ATP | Heat shock protein HSP 90-alpha | / | 0.538 | |
| 4ce1 | 7FK | ATP-dependent molecular chaperone HSP82 | / | 0.538 | |
| 1am1 | ADP | ATP-dependent molecular chaperone HSP82 | / | 0.535 | |
| 2xht | C0Y | Heat shock protein HSP 90-alpha | / | 0.535 | |
| 4asg | 814 | ATP-dependent molecular chaperone HSP82 | / | 0.532 | |
| 4xcl | AGS | Heat shock cognate 90 kDa protein | / | 0.532 | |
| 1qy8 | RDI | Endoplasmin | / | 0.531 | |
| 1uym | PU3 | Heat shock protein HSP 90-beta | / | 0.531 | |
| 2gfd | RDA | Endoplasmin | / | 0.531 | |
| 3r4n | FU5 | Heat shock protein HSP 90-alpha | / | 0.531 | |
| 1yc3 | 4BC | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 2bz5 | AB4 | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 4nh8 | 2LC | Heat shock protein HSP 90-alpha | / | 0.530 | |
| 2bt0 | CT5 | Heat shock protein HSP 90-alpha | / | 0.529 | |
| 4xc0 | ACP | Heat shock cognate 90 kDa protein | / | 0.529 | |
| 2bre | KJ2 | ATP-dependent molecular chaperone HSP82 | / | 0.528 | |
| 2iwu | NP5 | ATP-dependent molecular chaperone HSP82 | / | 0.528 | |
| 2xhr | C0P | Heat shock protein HSP 90-alpha | / | 0.527 | |
| 1uy8 | PU5 | Heat shock protein HSP 90-alpha | / | 0.526 | |
| 4ce2 | BO5 | ATP-dependent molecular chaperone HSP82 | / | 0.526 | |
| 1uyi | PUZ | Heat shock protein HSP 90-alpha | / | 0.524 | |
| 3qdd | 94M | Heat shock protein HSP 90-alpha | / | 0.523 | |
| 4egk | RDC | Heat shock protein HSP 90-alpha | / | 0.523 | |
| 1yet | GDM | Heat shock protein HSP 90-alpha | / | 0.521 | |
| 2bu8 | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.520 | |
| 2brc | CT5 | ATP-dependent molecular chaperone HSP82 | / | 0.519 | |
| 2o1u | ANP | Endoplasmin | / | 0.519 | |
| 2gqp | PA7 | Endoplasmin | / | 0.517 | |
| 2hg1 | N5O | Endoplasmin | / | 0.517 | |
| 2wi6 | ZZ6 | Heat shock protein HSP 90-alpha | / | 0.515 | |
| 2xd6 | XD6 | ATP-dependent molecular chaperone HSP82 | / | 0.515 | |
| 4eft | EFT | Heat shock protein HSP 90-alpha | / | 0.515 | |
| 1y4s | ADP | Chaperone protein HtpG | / | 0.514 | |
| 2wer | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.514 | |
| 3d2r | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.514 | |
| 4as9 | 4QS | ATP-dependent molecular chaperone HSP82 | / | 0.514 | |
| 1uy6 | PU3 | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 1uye | PU9 | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 3d0b | SNX | Heat shock protein HSP 90-alpha | / | 0.513 | |
| 2fxs | RDA | ATP-dependent molecular chaperone HSP82 | / | 0.512 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.512 | |
| 1bgq | RDC | ATP-dependent molecular chaperone HSP82 | / | 0.511 | |
| 2yee | 2EC | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 3o0i | P54 | Heat shock protein HSP 90-alpha | / | 0.511 | |
| 3b28 | B2X | Heat shock protein HSP 90-alpha | / | 0.510 | |
| 4ivg | ANP | TNF receptor-associated protein 1 | / | 0.510 | |
| 3k97 | 4CD | Heat shock protein HSP 90-alpha | / | 0.509 | |
| 2h55 | DZ8 | Heat shock protein HSP 90-alpha | / | 0.508 | |
| 3hyz | 42C | Heat shock protein HSP 90-alpha | / | 0.507 | |
| 1uy9 | PU6 | Heat shock protein HSP 90-alpha | / | 0.505 | |
| 2iws | NP4 | ATP-dependent molecular chaperone HSP82 | / | 0.504 | |
| 3rlr | 3RR | Heat shock protein HSP 90-alpha | / | 0.504 | |
| 4asf | 62U | ATP-dependent molecular chaperone HSP82 | / | 0.503 | |
| 1uyh | PU0 | Heat shock protein HSP 90-alpha | / | 0.502 | |
| 2fwz | H71 | Heat shock protein HSP 90-alpha | / | 0.502 | |
| 3crl | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.502 | |
| 4ce3 | L4V | ATP-dependent molecular chaperone HSP82 | / | 0.502 | |
| 1uyf | PU1 | Heat shock protein HSP 90-alpha | / | 0.501 | |
| 2hch | N5A | Endoplasmin | / | 0.501 | |
| 3peh | IBD | Endoplasmin homolog, putative | / | 0.501 | |
| 1uyd | PU8 | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 2yke | YKE | Heat shock protein HSP 90-alpha | / | 0.500 | |
| 3k98 | 1RC | Heat shock protein HSP 90-alpha | / | 0.496 | |
| 1uyk | PUX | Heat shock protein HSP 90-alpha | / | 0.495 | |
| 2fwy | H64 | Heat shock protein HSP 90-alpha | / | 0.491 | |
| 3hek | BD0 | Heat shock protein HSP 90-alpha | / | 0.491 | |
| 1yt0 | ADP | Endoplasmin | / | 0.490 | |
| 2wi5 | ZZ5 | Heat shock protein HSP 90-alpha | / | 0.490 | |
| 2zdy | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.490 | |
| 1u0y | PA7 | Endoplasmin | / | 0.489 | |
| 3ied | AN2 | HSP90 | / | 0.489 | |
| 4efu | EFU | Heat shock protein HSP 90-alpha | / | 0.488 | |
| 2yki | YKI | Heat shock protein HSP 90-alpha | / | 0.487 | |
| 3hz5 | Z64 | Heat shock protein HSP 90-alpha | / | 0.486 | |
| 2o1v | ADP | Endoplasmin | / | 0.485 | |
| 3c11 | GDM | ATP-dependent molecular chaperone HSP82 | / | 0.485 | |
| 2yei | XQI | Heat shock protein HSP 90-alpha | / | 0.483 | |
| 1gjv | AGS | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial | 2.7.11.4 | 0.481 | |
| 2wi4 | ZZ4 | Heat shock protein HSP 90-alpha | / | 0.481 | |
| 2wi7 | 2KL | Heat shock protein HSP 90-alpha | / | 0.481 | |
| 3wha | WHA | Heat shock protein HSP 90-alpha | / | 0.480 | |
| 2e0a | ANP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.479 | |
| 2qg2 | A91 | Heat shock protein HSP 90-alpha | / | 0.479 | |
| 3o6o | 94M | Heat shock protein 83 | / | 0.476 | |
| 2yej | ZZ3 | Heat shock protein HSP 90-alpha | / | 0.474 | |
| 2exl | GDM | Endoplasmin | / | 0.471 | |
| 2ykj | YKJ | Heat shock protein HSP 90-alpha | / | 0.471 | |
| 4bqg | 50Q | Heat shock protein HSP 90-alpha | / | 0.469 | |
| 1z59 | ADP | Type 2 DNA topoisomerase 6 subunit B | / | 0.468 | |
| 3q5k | D1U | Heat shock protein 83-1 | / | 0.466 | |
| 2esa | GDM | Endoplasmin | / | 0.465 | |
| 2vwc | BC2 | ATP-dependent molecular chaperone HSP82 | / | 0.465 | |
| 2iwx | M1S | ATP-dependent molecular chaperone HSP82 | / | 0.464 | |
| 2vcj | 2EQ | Heat shock protein HSP 90-alpha | / | 0.463 | |
| 3omu | IBD | Heat shock protein 83 | / | 0.463 | |
| 1i58 | ACP | Chemotaxis protein CheA | 2.7.13.3 | 0.462 | |
| 2zkj | ADP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial | 2.7.11.2 | 0.462 | |
| 3lqf | NAD | Galactitol dehydrogenase | / | 0.462 | |
| 1i59 | ANP | Chemotaxis protein CheA | 2.7.13.3 | 0.460 | |
| 1nhh | ANP | DNA mismatch repair protein MutL | / | 0.459 | |
| 1z5a | ADP | Type 2 DNA topoisomerase 6 subunit B | / | 0.459 | |
| 2bu2 | ATP | [Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial | 2.7.11.2 | 0.459 | |
| 1uyc | PU7 | Heat shock protein HSP 90-alpha | / | 0.456 | |
| 2qfo | A13 | Heat shock protein HSP 90-alpha | / | 0.454 | |
| 4z1f | H71 | Heat shock protein 75 kDa, mitochondrial | / | 0.453 | |
| 2qfo | A51 | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 2xx4 | 13I | ATP-dependent molecular chaperone HSP82 | / | 0.450 | |
| 2ykb | YKB | Heat shock protein HSP 90-alpha | / | 0.450 | |
| 3h4l | ANP | DNA mismatch repair protein PMS1 | / | 0.450 | |
| 1zxm | ANP | DNA topoisomerase 2-alpha | 5.99.1.3 | 0.448 | |
| 1i5a | ACP | Chemotaxis protein CheA | 2.7.13.3 | 0.447 | |
| 2vbd | V10 | Isopenicillin N synthase | 1.21.3.1 | 0.446 | |
| 1e7q | NAP | GDP-L-fucose synthase | / | 0.445 | |
| 1i3m | UD1 | UDP-glucose 4-epimerase | / | 0.444 | |
| 2yjw | YJW | Heat shock protein HSP 90-alpha | / | 0.443 | |
| 3fro | NHF | GlgA glycogen synthase | / | 0.443 | |
| 2uwd | 2GG | Heat shock protein HSP 90-alpha | / | 0.441 | |
| 1bsv | NDP | GDP-L-fucose synthase | / | 0.440 | |
| 1zxn | ADP | DNA topoisomerase 2-alpha | 5.99.1.3 | 0.440 | |
| 2q63 | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.440 | |
| 2vci | 2GJ | Heat shock protein HSP 90-alpha | / | 0.440 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.440 | |
| 4ia3 | BIV | Vitamin D3 receptor A | / | 0.440 | |
| 4y9q | C2E | Uncharacterized protein | / | 0.440 |