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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1qyvNAPEstradiol 17-beta-dehydrogenase 11.1.1.62

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1qyvNAPEstradiol 17-beta-dehydrogenase 11.1.1.621.000
3toxNAPPutative oxidoreductase/0.592
1gcoNADGlucose 1-dehydrogenase1.1.1.470.582
4b79NADProbable short-chain dehydrogenase/0.581
3ai2NDPNADPH-sorbose reductase/0.571
1cydNDPCarbonyl reductase [NADPH] 21.1.1.1840.570
1geeNADGlucose 1-dehydrogenase1.1.1.470.570
1fduNAPEstradiol 17-beta-dehydrogenase 11.1.1.620.566
1g6kNADGlucose 1-dehydrogenase1.1.1.470.561
1xg5NAPDehydrogenase/reductase SDR family member 11/0.560
4dmmNAP3-oxoacyl-[acyl-carrier-protein] reductase/0.560
1ae1NAPTropinone reductase 1/0.556
4j7uNAPSepiapterin reductase1.1.1.1530.555
1xkqNDPUncharacterized protein/0.554
3w8eNAD3-hydroxybutyrate dehydrogenase/0.550
3bhiNAPCarbonyl reductase [NADPH] 11.1.1.1840.548
4j7xNAPSepiapterin reductase1.1.1.1530.548
3gy0NAPNAD(P)-dependent oxidoreductase/0.547
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.546
1e3sNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.542
1ipeNDPTropinone reductase 21.1.1.2360.542
1pr9NAPL-xylulose reductase1.1.1.100.542
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.540
1rwbNADGlucose 1-dehydrogenase1.1.1.470.540
1snyNAPLD36273p/0.540
5idwNAPShort-chain dehydrogenase/reductase SDR/0.539
4bmvNAPShort-chain dehydrogenase/0.538
2ztmNADD(-)-3-hydroxybutyrate dehydrogenase/0.536
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.535
4qecNAPElxO/0.535
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.533
3ai3NDPNADPH-sorbose reductase/0.532
4hwkNAPSepiapterin reductase1.1.1.1530.530
1w4zNAPPutative ketoacyl reductase1.3.10.529
1wntNAPL-xylulose reductase1.1.1.100.529
2jahNDPClavaldehyde dehydrogenase/0.528
3lqfNADGalactitol dehydrogenase/0.528
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.528
5jydNADShort chain dehydrogenase/0.528
2q2vNADBeta-D-hydroxybutyrate dehydrogenase/0.527
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.527
3f1kNAPUncharacterized oxidoreductase YciK10.527
3qrwNDPPutative ketoacyl reductase1.3.10.526
1nffNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.525
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.525
2q2qNADBeta-D-hydroxybutyrate dehydrogenase/0.524
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.523
4nbuNAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.523
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.521
3d3wNAPL-xylulose reductase1.1.1.100.520
3p19NDPPutative blue fluorescent protein/0.520
1g0nNDPTetrahydroxynaphthalene reductase1.1.1.2520.519
1n5dNDPCarbonyl reductase [NADPH] 1/0.519
1edoNAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic1.1.1.1000.518
4fj2NAP17beta-hydroxysteroid dehydrogenase/0.518
4iqgNAPShort-chain dehydrogenase/reductase SDR/0.518
4esoNAPPutative oxidoreductase/0.517
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.517
1xseNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.516
4dc1NDPPutative ketoacyl reductase1.3.10.515
2dteNAIGlucose 1-dehydrogenase related protein/0.514
3w8fNAD3-hydroxybutyrate dehydrogenase/0.514
1nfrNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.513
2zatNAPDehydrogenase/reductase SDR family member 41.1.1.1840.513
1x7hNDPPutative ketoacyl reductase1.3.10.512
3qwfNAP17beta-hydroxysteroid dehydrogenase/0.512
5jsfNAD17-beta-hydroxysteroid dehydrogenase 141.1.10.511
1x7gNAPPutative ketoacyl reductase1.3.10.510
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.510
4z3dNDPCarbonyl reductase [NADPH] 11.1.1.1840.510
2hrbNAPCarbonyl reductase [NADPH] 31.1.1.1840.509
3rkuNAPNADP-dependent 3-hydroxy acid dehydrogenase/0.509
3l77NJPShort-chain alcohol dehydrogenase/0.508
4pvdNDPNADPH-dependent methylglyoxal reductase GRE2/0.508
3vdqNAD3-hydroxybutyrate dehydrogenase/0.507
5jlaNADPutative short-chain dehydrogenase/reductase/0.507
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.506
2ztlNADD(-)-3-hydroxybutyrate dehydrogenase/0.506
1oaaNAPSepiapterin reductase1.1.1.1530.505
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.505
3rj5NADAlcohol dehydrogenase1.1.1.10.505
4i5eNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.504
1rkxNADCDP-D-glucose-4,6-dehydratase/0.503
3w8dNAD3-hydroxybutyrate dehydrogenase/0.503
4bmsNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.503
4fn4NADShort chain dehydrogenase/0.503
5js6NAD17-beta-hydroxysteroid dehydrogenase 141.1.10.502
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.500
2yutNAPPutative short-chain oxidoreductase/0.500
4gh5NADShort-chain dehydrogenase/reductase SDR/0.500
4nbwNADShort-chain dehydrogenase/reductase SDR/0.499
3gegNADShort-chain dehydrogenase/reductase SDR/0.498
1g1aNADdTDP-glucose 4,6-dehydratase/0.497
3uxyNADShort-chain dehydrogenase/reductase SDR/0.497
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.496
2wdzNADGalactitol dehydrogenase/0.496
3wdsNADNADH-dependent quinuclidinone reductase/0.495
4wjiNAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase/0.494
1zemNADXylitol dehydrogenase/0.492
3rj9NADAlcohol dehydrogenase1.1.1.10.492
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.491
4qedNAPElxO/0.490
4rf2NAPNADPH dependent R-specific alcohol dehydrogenase/0.489
4yagNAIC alpha-dehydrogenase/0.488
1gegNADDiacetyl reductase [(S)-acetoin forming]1.1.1.3040.487
2bfoNDPPteridine reductase 11.5.1.330.487
2jkvNAP6-phosphogluconate dehydrogenase, decarboxylating1.1.1.440.487
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.487
2hsdNAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase1.1.1.530.486
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.486
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.485
3r3sNADPutative oxidoreductase/0.484
1sbyNADAlcohol dehydrogenase1.1.1.10.483
3o4rNAPDehydrogenase/reductase SDR family member 41.1.1.1840.483
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.483
2ag5NAD3-hydroxybutyrate dehydrogenase type 2/0.481
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.480
3a28NADL-2,3-butanediol dehydrogenase1.1.1.760.479
3sjuNDPKeto reductase/0.479
3qwbNDPProbable quinone oxidoreductase1.6.5.50.478
1b15NAEAlcohol dehydrogenase1.1.1.10.477
3bmoNAPPteridine reductase/0.477
4yaiNAIC alpha-dehydrogenase/0.477
1b14NADAlcohol dehydrogenase1.1.1.10.476
3ak4NADNADH-dependent quinuclidinone reductase/0.476
3tn7NJPShort-chain alcohol dehydrogenase/0.476
4bv9NDPKetimine reductase mu-crystallin1.5.1.250.476
4egbNADdTDP-glucose 4,6-dehydratase/0.476
1e3wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.475
2bd0NAPSepiapterin reductase/0.475
3ndrNADPyridoxal 4-dehydrogenase1.1.1.1070.475
1t2aNDPGDP-mannose 4,6 dehydratase4.2.1.470.474
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.474
2p5uNADUDP-glucose 4-epimerase/0.474
1e6wNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.473
3nugNADPyridoxal 4-dehydrogenase1.1.1.1070.473
5dp2NAPCurF/0.473
1n7hNDPGDP-mannose 4,6 dehydratase 24.2.1.470.472
5lc1NADL-threonine 3-dehydrogenase/0.472
3s55NADPutative short-chain dehydrogenase/reductase/0.471
1n7gNDPGDP-mannose 4,6 dehydratase 24.2.1.470.470
2c0cNAPProstaglandin reductase 310.470
3tscNADUncharacterized protein/0.470
1yqdNAPSinapyl alcohol dehydrogenase/0.469
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.469
1bdbNADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase/0.468
4o0lNDPNADPH-dependent 3-quinuclidinone reductase/0.468
1qorNDPQuinone oxidoreductase 1/0.467
2wsbNADGalactitol dehydrogenase/0.467
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.467
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.467
3sx2NADUncharacterized protein/0.467
1hdoNAPFlavin reductase (NADPH)/0.466
1iy8NADLevodione reductase/0.466
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.466
3uceNDPDehydrogenase/0.465
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.465
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.464
2ekpNAD2-deoxy-D-gluconate 3-dehydrogenase/0.463
4impNDPPolyketide synthase extender modules 3-4/0.463
4bkqNAIEnoyl-[acyl-carrier-protein] reductase [NADH]/0.462
1b16NAQAlcohol dehydrogenase1.1.1.10.461
2gdzNAD15-hydroxyprostaglandin dehydrogenase [NAD(+)]1.1.1.1410.461
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.461
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.461
1mg5NAIAlcohol dehydrogenase1.1.1.10.460
3a4vNADNDP-sugar epimerase/0.460
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.460
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.460
3wieDN4Glucose 1-dehydrogenase/0.460
4fc7NAPPeroxisomal 2,4-dienoyl-CoA reductase1.3.1.340.460
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.459
2ydxNAPMethionine adenosyltransferase 2 subunit beta/0.459
3w6uNAP6-phosphogluconate dehydrogenase, NAD-binding protein/0.459
3gqvNAPEnoyl reductase LovC10.458
3zbrNAP2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.457
4b8wNAPGDP-L-fucose synthase1.1.1.2710.457
4cqlNADEstradiol 17-beta-dehydrogenase 81.1.1.620.457
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.457
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.456
3widNAPGlucose 1-dehydrogenase/0.456
4cr8NADN-acylmannosamine 1-dehydrogenase1.1.1.2330.456
4e5yNDPGDP-L-fucose synthase1.1.1.2710.455
2v6gNAP3-oxo-Delta(4,5)-steroid 5-beta-reductase/0.454
3hazFADBifunctional protein PutA/0.454
3pgxNADUncharacterized NAD-dependent oxidoreductase MAP_4146/0.454
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.454
5koiNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.454
1greFADGlutathione reductase, mitochondrial1.8.1.70.452
1v35NAIEnoyl-ACP reductase/0.452
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.452
1xe55FEPlasmepsin-23.4.23.390.451
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.451
2yy7NADL-threonine dehydrogenase/0.451
1nytNAPShikimate dehydrogenase (NADP(+))/0.450
2c20NADUDP-glucose 4-epimerase/0.449
3ijrNADOxidoreductase, short chain dehydrogenase/reductase family/0.449
1tehNADAlcohol dehydrogenase class-31.1.1.10.448
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.448
3pw8ACO1,2-phenylacetyl-CoA epoxidase, subunit A1.14.13.1490.448
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.448
4q71FADBifunctional protein PutA/0.448
2cntCOARibosomal-protein-alanine acetyltransferase/0.447
2gn8NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting)4.2.1.1150.447
2q4bNAPUncharacterized protein At5g02240/0.447
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.447
1naiNADUDP-glucose 4-epimerase5.1.3.20.446
2y0mACOHistone acetyltransferase KAT8/0.446
3aho3A2Oligopeptidase/0.446
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.446
4rvuNDPProbable quinone reductase Qor (NADPH:quinone reductase) (Zeta-crystallin homolog protein)/0.446
1eq2NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.445
3s5wNAPL-ornithine N(5)-monooxygenase/0.445
1kolNADGlutathione-independent formaldehyde dehydrogenase/0.444
1wvgAPRCDP-glucose 4,6-dehydratase4.2.1.450.444
3nx4NAPPutative oxidoreductase/0.444
3tjzGNPADP-ribosylation factor 1/0.444
4bc7FADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.444
1graFADGlutathione reductase, mitochondrial1.8.1.70.443
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.443
3u4cNDPNADPH-dependent reductase BacG/0.443
4rvgTYDD-mycarose 3-C-methyltransferase/0.443
1o8cNDPProbable acrylyl-CoA reductase AcuI1.3.1.840.442
1yqxNAPSinapyl alcohol dehydrogenase/0.442
2v6oFADThioredoxin glutathione reductase/0.442
3hl0NADMaleylacetate reductase/0.442
3p8z36AGenome polyprotein2.1.1.560.442
3s5wFADL-ornithine N(5)-monooxygenase/0.442
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.442
4g7gVFVLanosterol 14-alpha-demethylase/0.442
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.442
4m55NADUDP-glucuronic acid decarboxylase 14.1.1.350.442
5dbgNADIridoid synthase1.3.1.990.442
4jbiNDPAlcohol dehydrogenase (Zinc)/0.441
1rneC60Renin3.4.23.150.440
2ikuLIYRenin3.4.23.150.440
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.440
4frkDWDBeta-secretase 13.4.23.460.440
4h3i10VBeta-secretase 13.4.23.460.440