Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hxy NDP Plm1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4hxy NDPPlm1 / 1.298
5d2e NAPMlnE / 1.063
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.895
3mje NDPAmphB / 0.894
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.888
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.883
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.877
3p19 NDPPutative blue fluorescent protein / 0.874
3icp NADNAD-dependent epimerase/dehydratase / 0.870
2p5y NADUDP-glucose 4-epimerase / 0.866
4imp NDPPolyketide synthase extender modules 3-4 / 0.860
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.857
2c29 NAPDihydroflavonol 4-reductase / 0.852
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.848
3uce NDPDehydrogenase / 0.841
3ko8 NADNAD-dependent epimerase/dehydratase / 0.838
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.833
1i3l NADUDP-glucose 4-epimerase / 0.827
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.827
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.825
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.821
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.820
2jah NDPClavaldehyde dehydrogenase / 0.819
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.811
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.811
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.809
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.809
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.808
2wsb NADGalactitol dehydrogenase / 0.807
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.806
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.803
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.803
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.802
3aw9 NADNAD-dependent epimerase/dehydratase / 0.802
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.802
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.802
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.801
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.796
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.795
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.794
4kwh NAPReductase homolog / 0.790
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.788
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.788
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.787
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.786
1zem NADXylitol dehydrogenase / 0.785
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.785
2z1m NDPGDP-mannose 4,6-dehydratase / 0.781
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.779
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.777
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.776
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.776
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.775
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.772
4u7w NDPMxaA / 0.769
1orr NADCDP-paratose 2-epimerase / 0.768
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.767
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.767
3qrw NDPPutative ketoacyl reductase 1.3.1 0.766
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.766
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.766
3o26 NDPSalutaridine reductase / 0.762
4b79 NADProbable short-chain dehydrogenase / 0.762
3r3s NADPutative oxidoreductase / 0.761
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.760
4b4o NDPEpimerase family protein SDR39U1 / 0.759
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.759
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.758
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.758
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.757
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.756
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.756
3l77 NJPShort-chain alcohol dehydrogenase / 0.755
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.755
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.754
3ai3 NDPNADPH-sorbose reductase / 0.754
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.754
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.753
1sny NAPLD36273p / 0.753
3ai2 NDPNADPH-sorbose reductase / 0.752
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.752
1ae1 NAPTropinone reductase 1 / 0.751
1rpn NDPGDP-mannose 4,6-dehydratase / 0.751
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.751
2yut NAPPutative short-chain oxidoreductase / 0.750
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.750
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.749
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.749
4idg NADPutative UDP-glucose 4-epimerase / 0.749
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.748
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.748
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.748
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.746
3a4v NADNDP-sugar epimerase / 0.745
3tox NAPPutative oxidoreductase / 0.745
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.745
1sby NADAlcohol dehydrogenase 1.1.1.1 0.744
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.743
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.743
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.743
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.743
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.742
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.742
4j7x NAPSepiapterin reductase 1.1.1.153 0.741
4qec NAPElxO / 0.741
4dbz NDPPutative ketoacyl reductase 1.3.1 0.740
3tn7 NJPShort-chain alcohol dehydrogenase / 0.739
1x7h NDPPutative ketoacyl reductase 1.3.1 0.738
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.738
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.737
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.736
3bmo NAPPteridine reductase / 0.736
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.735
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.735
1w4z NAPPutative ketoacyl reductase 1.3.1 0.734
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.733
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.732
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.732
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.730
2dte NAIGlucose 1-dehydrogenase related protein / 0.730
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.729
1g1a NADdTDP-glucose 4,6-dehydratase / 0.729
3d3w NAPL-xylulose reductase 1.1.1.10 0.729
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.729
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.729
3sju NDPKeto reductase / 0.727
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.726
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.724
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.723
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.722
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.722
1ipe NDPTropinone reductase 2 1.1.1.236 0.722
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.721
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.721
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.720
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.719
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.719
4wec NADShort chain dehydrogenase / 0.719
4yag NAIC alpha-dehydrogenase / 0.719
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.718
5jyd NADShort chain dehydrogenase / 0.718
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.717
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.717
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.716
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.716
4j7u NAPSepiapterin reductase 1.1.1.153 0.716
1x7g NAPPutative ketoacyl reductase 1.3.1 0.715
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.715
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.715
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.713
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.713
5jla NADPutative short-chain dehydrogenase/reductase / 0.713
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.712
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.711
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.710
4egb NADdTDP-glucose 4,6-dehydratase / 0.710
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.709
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.709
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.707
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.706
3a1n NADNDP-sugar epimerase / 0.706
4bmv NAPShort-chain dehydrogenase / 0.706
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.705
3ak4 NADNADH-dependent quinuclidinone reductase / 0.705
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.703
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.703
2p5u NADUDP-glucose 4-epimerase / 0.701
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.701
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.700
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.699
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.698
4l4x NDPAmphI / 0.697
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.696
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.695
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.695
1d4o NAPNAD(P) transhydrogenase, mitochondrial / 0.694
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.694
1oaa NAPSepiapterin reductase 1.1.1.153 0.694
2z95 NDPGDP-mannose 4,6-dehydratase / 0.694
4xyb NDPFormate dehydrogenase / 0.694
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.693
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.692
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.691
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.691
4yai NAIC alpha-dehydrogenase / 0.691
4j16 NAPNAD(P) transhydrogenase subunit beta / 0.690
3u4c NDPNADPH-dependent reductase BacG / 0.687
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.686
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.685
3ajr NADNDP-sugar epimerase / 0.684
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.683
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.682
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.682
4qed NAPElxO / 0.682
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.681
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.681
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.681
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.681
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.680
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.679
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.679
2c20 NADUDP-glucose 4-epimerase / 0.678
3tsc NADUncharacterized protein / 0.678
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
5j23 A2RPutative 2-hydroxyacid dehydrogenase / 0.678
3s55 NADPutative short-chain dehydrogenase/reductase / 0.676
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.676
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
2bfo NDPPteridine reductase 1 1.5.1.33 0.675
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.674
3sx2 NADUncharacterized protein / 0.674
4clo NAPPteridine reductase / 0.674
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.673
1pr9 NAPL-xylulose reductase 1.1.1.10 0.673
2y05 NAPProstaglandin reductase 1 / 0.673
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.672
4cr8 NADN-acylmannosamine 1-dehydrogenase 1.1.1.233 0.672
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.671
2jl1 NAPTriphenylmethane reductase / 0.670
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.669
3orf NADDihydropteridine reductase 1.5.1.34 0.669
4hwk NAPSepiapterin reductase 1.1.1.153 0.669
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.668
1zh8 NAPUncharacterized protein / 0.668
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.668
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.667
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.667
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.666
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.666
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.666
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.666
4eso NAPPutative oxidoreductase / 0.665
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.663
2yy7 NADL-threonine dehydrogenase / 0.663
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.663
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.662
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.662
1e7q NAPGDP-L-fucose synthase / 0.661
1ek5 NADUDP-glucose 4-epimerase / 0.661
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.661
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.661
4id9 NADPutative UDP-glucose 4-epimerase / 0.661
2vwh NAPGlucose 1-dehydrogenase / 0.659
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.659
3wmx NADNAD dependent epimerase/dehydratase / 0.658
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.658
4ejm NAPPutative zinc-binding dehydrogenase / 0.658
1xkq NDPUncharacterized protein / 0.657
2vwq NAPGlucose 1-dehydrogenase / 0.657
2x0i NAIMalate dehydrogenase / 0.657
3f1k NAPUncharacterized oxidoreductase YciK 1 0.655
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.655
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.654
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.653
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
3ulk NDPKetol-acid reductoisomerase (NADP(+)) / 0.653
3wle NAD(R)-specific carbonyl reductase / 0.653
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.653
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.652
2yjz NAPMetalloreductase STEAP4 1.16.1 0.652
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.651
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.650
1fxs NAPGDP-L-fucose synthase / 0.650
2vwp NDPGlucose 1-dehydrogenase / 0.650