2.410 Å
X-ray
2013-02-01
Name: | NAD/NADP transhydrogenase alpha subunit 1 |
---|---|
ID: | Q72GR8_THET2 |
AC: | Q72GR8 |
Organism: | Thermus thermophilus |
Reign: | Bacteria |
TaxID: | 262724 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 65.832 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.311 | 1373.625 |
% Hydrophobic | % Polar |
---|---|
46.68 | 53.32 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 37.71 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
28.2506 | 14.3221 | -13.4744 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C3B | CG2 | VAL- 198 | 3.99 | 0 | Hydrophobic |
C2B | CG1 | VAL- 198 | 3.71 | 0 | Hydrophobic |
O1A | NH1 | ARG- 199 | 2.86 | 146.78 | H-Bond (Protein Donor) |
O1A | NE | ARG- 199 | 2.91 | 147.86 | H-Bond (Protein Donor) |
O1A | CZ | ARG- 199 | 3.32 | 0 | Ionic (Protein Cationic) |
C5B | CB | ALA- 256 | 3.76 | 0 | Hydrophobic |
C3D | CB | GLN- 257 | 3.94 | 0 | Hydrophobic |
C4B | CG | PRO- 264 | 3.99 | 0 | Hydrophobic |
C2B | CD2 | LEU- 266 | 4.27 | 0 | Hydrophobic |