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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1x7g NAP Putative ketoacyl reductase 1.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1x7g NAPPutative ketoacyl reductase 1.3.1 1.292
1x7h NDPPutative ketoacyl reductase 1.3.1 1.168
4dc0 NDPPutative ketoacyl reductase 1.3.1 1.088
4dc1 NDPPutative ketoacyl reductase 1.3.1 1.034
1w4z NAPPutative ketoacyl reductase 1.3.1 0.991
4dbz NDPPutative ketoacyl reductase 1.3.1 0.990
3qrw NDPPutative ketoacyl reductase 1.3.1 0.985
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.964
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.946
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.939
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.934
3ai2 NDPNADPH-sorbose reductase / 0.933
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.932
3sju NDPKeto reductase / 0.926
4b79 NADProbable short-chain dehydrogenase / 0.921
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.920
3p19 NDPPutative blue fluorescent protein / 0.913
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.908
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.906
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.894
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.892
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.891
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.889
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.886
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.877
3l77 NJPShort-chain alcohol dehydrogenase / 0.876
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.873
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.871
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.871
3ai3 NDPNADPH-sorbose reductase / 0.870
3tn7 NJPShort-chain alcohol dehydrogenase / 0.868
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.863
4fn4 NADShort chain dehydrogenase / 0.862
2bd0 NAPSepiapterin reductase / 0.861
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.858
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.857
3ak4 NADNADH-dependent quinuclidinone reductase / 0.857
4hwk NAPSepiapterin reductase 1.1.1.153 0.853
4j7u NAPSepiapterin reductase 1.1.1.153 0.853
2dte NAIGlucose 1-dehydrogenase related protein / 0.852
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.849
3o26 NDPSalutaridine reductase / 0.848
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.846
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.843
5jla NADPutative short-chain dehydrogenase/reductase / 0.843
4kwh NAPReductase homolog / 0.842
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.839
4bmv NAPShort-chain dehydrogenase / 0.838
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.837
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.837
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.836
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.833
2wsb NADGalactitol dehydrogenase / 0.831
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.829
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.828
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.827
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.825
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.825
1ipe NDPTropinone reductase 2 1.1.1.236 0.823
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.823
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.822
1ae1 NAPTropinone reductase 1 / 0.816
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.816
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.814
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.813
3u4c NDPNADPH-dependent reductase BacG / 0.812
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.811
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.811
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.810
4yai NAIC alpha-dehydrogenase / 0.810
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.808
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.808
3uce NDPDehydrogenase / 0.807
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.805
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.803
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.801
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.799
3mje NDPAmphB / 0.799
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.799
2jah NDPClavaldehyde dehydrogenase / 0.797
3geg NADShort-chain dehydrogenase/reductase SDR / 0.795
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.791
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.791
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.790
4yag NAIC alpha-dehydrogenase / 0.789
4wec NADShort chain dehydrogenase / 0.788
3tox NAPPutative oxidoreductase / 0.787
1sby NADAlcohol dehydrogenase 1.1.1.1 0.785
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.784
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.782
3wds NADNADH-dependent quinuclidinone reductase / 0.780
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.779
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.779
1sny NAPLD36273p / 0.776
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.776
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.775
3s55 NADPutative short-chain dehydrogenase/reductase / 0.775
4qed NAPElxO / 0.773
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.772
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.771
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.771
2wdz NADGalactitol dehydrogenase / 0.770
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.767
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.766
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.763
4u7w NDPMxaA / 0.762
4j7x NAPSepiapterin reductase 1.1.1.153 0.761
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.760
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.758
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.758
4qec NAPElxO / 0.757
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.756
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.756
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.755
1pr9 NAPL-xylulose reductase 1.1.1.10 0.753
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.752
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.751
3d3w NAPL-xylulose reductase 1.1.1.10 0.751
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.750
1oaa NAPSepiapterin reductase 1.1.1.153 0.750
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.750
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.749
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.748
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.748
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.748
1zem NADXylitol dehydrogenase / 0.745
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.745
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.743
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.742
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.742
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.742
1iy8 NADLevodione reductase / 0.740
3bmo NAPPteridine reductase / 0.739
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.738
2c29 NAPDihydroflavonol 4-reductase / 0.738
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.738
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.738
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.736
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.736
1xkq NDPUncharacterized protein / 0.735
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.735
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.735
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.734
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.733
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.732
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.729
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.729
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.728
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.725
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.725
5d2e NAPMlnE / 0.725
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.724
2yut NAPPutative short-chain oxidoreductase / 0.722
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.722
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.719
5lc1 NADL-threonine 3-dehydrogenase / 0.719
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.716
4hxy NDPPlm1 / 0.715
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.714
4idg NADPutative UDP-glucose 4-epimerase / 0.713
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.711
3tsc NADUncharacterized protein / 0.711
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.711
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.710
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.709
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.709
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.708
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.707
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.707
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.706
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.705
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.704
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.704
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.704
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.700
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.700
1orr NADCDP-paratose 2-epimerase / 0.699
3a4v NADNDP-sugar epimerase / 0.699
3zu2 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.699
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.698
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.698
3icp NADNAD-dependent epimerase/dehydratase / 0.697
3orf NADDihydropteridine reductase 1.5.1.34 0.695
4b4o NDPEpimerase family protein SDR39U1 / 0.695
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.694
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.694
3wmx NADNAD dependent epimerase/dehydratase / 0.694
3h2s NDPPutative NADH-flavin reductase / 0.693
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.693
3a9w NADNDP-sugar epimerase / 0.692
3f1k NAPUncharacterized oxidoreductase YciK 1 0.692
5jyd NADShort chain dehydrogenase / 0.692
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.691
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.691
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.690
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.690
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.688
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.688
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.687
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.686
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.685
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.684
3lqf NADGalactitol dehydrogenase / 0.683
3wfj NAD2-dehydropantoate 2-reductase / 0.683
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.682
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.681
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.680
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.679
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.679
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
3r3s NADPutative oxidoreductase / 0.678
3sx2 NADUncharacterized protein / 0.678
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.676
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.675
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.674
1hdo NAPFlavin reductase (NADPH) / 0.674
4egb NADdTDP-glucose 4,6-dehydratase / 0.672
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.671
2bfo NDPPteridine reductase 1 1.5.1.33 0.670
3ajr NADNDP-sugar epimerase / 0.667
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.667
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.665
4eso NAPPutative oxidoreductase / 0.665
2p5y NADUDP-glucose 4-epimerase / 0.663
2yy7 NADL-threonine dehydrogenase / 0.663
4clo NAPPteridine reductase / 0.663
4o1m NADEnoyl-acyl carrier reductase / 0.663
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
2jcv NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.661
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.660
3i6i NDPPutative leucoanthocyanidin reductase 1 / 0.660
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.660
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.659
4xyb NDPFormate dehydrogenase / 0.658
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.657
3hwr NDP2-dehydropantoate 2-reductase / 0.657
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.657
1i3l NADUDP-glucose 4-epimerase / 0.656
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.656
3h4v NAPPteridine reductase 1 1.5.1.33 0.655
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.655
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.654
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.654
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.653
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.653
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.652
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.652
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.650
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.650