2.200 Å
X-ray
2007-01-04
Name: | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
---|---|
ID: | DXR_MYCTU |
AC: | P9WNS1 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 14.494 |
---|---|
Number of residues: | 47 |
Including | |
Standard Amino Acids: | 45 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.230 | 1123.875 |
% Hydrophobic | % Polar |
---|---|
36.04 | 63.96 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 55.46 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
11.1571 | -4.59502 | 90.7589 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | N | THR- 21 | 3.22 | 129.02 | H-Bond (Protein Donor) |
O1X | OG1 | THR- 21 | 2.91 | 137.47 | H-Bond (Protein Donor) |
O3B | OG1 | THR- 21 | 2.7 | 163.66 | H-Bond (Ligand Donor) |
O2A | N | SER- 23 | 3.02 | 164.47 | H-Bond (Protein Donor) |
O2N | N | ILE- 24 | 3.01 | 154.03 | H-Bond (Protein Donor) |
C5D | CG1 | ILE- 24 | 4.37 | 0 | Hydrophobic |
C4N | CD1 | ILE- 24 | 4.4 | 0 | Hydrophobic |
O2B | N | GLY- 47 | 2.81 | 160.76 | H-Bond (Protein Donor) |
O2X | N | GLY- 48 | 3.04 | 149.23 | H-Bond (Protein Donor) |
O2X | N | HIS- 50 | 2.8 | 164.5 | H-Bond (Protein Donor) |
C1B | CD2 | LEU- 104 | 3.97 | 0 | Hydrophobic |
C5B | CG1 | VAL- 105 | 3.84 | 0 | Hydrophobic |
C4D | CB | ALA- 126 | 4.01 | 0 | Hydrophobic |
C1D | CB | ALA- 126 | 4.31 | 0 | Hydrophobic |
O3D | N | LYS- 128 | 3.05 | 160.93 | H-Bond (Protein Donor) |
C1D | CG | LYS- 128 | 4.15 | 0 | Hydrophobic |
C4N | CE | MET- 267 | 4.18 | 0 | Hydrophobic |
O2N | O | HOH- 2263 | 2.54 | 155.3 | H-Bond (Protein Donor) |
O7N | O | HOH- 2264 | 2.73 | 163.02 | H-Bond (Protein Donor) |