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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nfr NAD 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 1.214
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 1.116
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.978
3s55 NADPutative short-chain dehydrogenase/reductase / 0.951
3sx2 NADUncharacterized protein / 0.934
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.923
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.916
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.903
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.880
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.880
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.871
3wds NADNADH-dependent quinuclidinone reductase / 0.853
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.852
3tsc NADUncharacterized protein / 0.848
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.828
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.824
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.824
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.824
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.823
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.816
4bmv NAPShort-chain dehydrogenase / 0.815
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.809
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.808
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.806
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.802
4wec NADShort chain dehydrogenase / 0.800
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.797
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.796
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.795
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.795
2wsb NADGalactitol dehydrogenase / 0.793
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.792
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.791
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.791
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.790
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.790
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.788
3ak4 NADNADH-dependent quinuclidinone reductase / 0.787
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.787
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.787
3l77 NJPShort-chain alcohol dehydrogenase / 0.786
4qec NAPElxO / 0.786
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.784
1pr9 NAPL-xylulose reductase 1.1.1.10 0.783
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.782
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.781
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.781
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.780
4j7x NAPSepiapterin reductase 1.1.1.153 0.779
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.778
3tn7 NJPShort-chain alcohol dehydrogenase / 0.778
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.778
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.777
2dte NAIGlucose 1-dehydrogenase related protein / 0.777
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.777
4b79 NADProbable short-chain dehydrogenase / 0.777
2wdz NADGalactitol dehydrogenase / 0.776
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.775
3ai3 NDPNADPH-sorbose reductase / 0.774
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.774
4j7u NAPSepiapterin reductase 1.1.1.153 0.773
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.772
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.771
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.771
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.770
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.770
1orr NADCDP-paratose 2-epimerase / 0.769
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.768
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.767
3o26 NDPSalutaridine reductase / 0.767
1zem NADXylitol dehydrogenase / 0.766
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.764
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.762
1oaa NAPSepiapterin reductase 1.1.1.153 0.762
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.762
5jla NADPutative short-chain dehydrogenase/reductase / 0.762
1w4z NAPPutative ketoacyl reductase 1.3.1 0.761
4yai NAIC alpha-dehydrogenase / 0.761
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.759
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.758
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.756
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.755
4fn4 NADShort chain dehydrogenase / 0.755
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.754
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.754
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.752
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.752
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.751
1x7h NDPPutative ketoacyl reductase 1.3.1 0.751
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.750
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.750
3qrw NDPPutative ketoacyl reductase 1.3.1 0.749
4qed NAPElxO / 0.749
3p19 NDPPutative blue fluorescent protein / 0.747
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.747
4hwk NAPSepiapterin reductase 1.1.1.153 0.747
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.747
4dbz NDPPutative ketoacyl reductase 1.3.1 0.746
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.745
3ai2 NDPNADPH-sorbose reductase / 0.745
2bd0 NAPSepiapterin reductase / 0.744
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.744
1ipe NDPTropinone reductase 2 1.1.1.236 0.741
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.741
3icp NADNAD-dependent epimerase/dehydratase / 0.740
4kwh NAPReductase homolog / 0.740
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.739
3d3w NAPL-xylulose reductase 1.1.1.10 0.738
1sny NAPLD36273p / 0.737
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.737
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.737
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.737
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.735
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.735
1x7g NAPPutative ketoacyl reductase 1.3.1 0.734
2c29 NAPDihydroflavonol 4-reductase / 0.733
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.732
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.732
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.731
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.731
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.730
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.729
3ko8 NADNAD-dependent epimerase/dehydratase / 0.728
3orf NADDihydropteridine reductase 1.5.1.34 0.728
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.727
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.726
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.726
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.726
1sby NADAlcohol dehydrogenase 1.1.1.1 0.724
3a9w NADNDP-sugar epimerase / 0.724
1xkq NDPUncharacterized protein / 0.723
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.723
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.722
3sju NDPKeto reductase / 0.722
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.721
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.720
2yy7 NADL-threonine dehydrogenase / 0.720
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.719
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.719
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.718
3a1n NADNDP-sugar epimerase / 0.718
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.718
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.717
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.715
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.714
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.713
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.711
4yag NAIC alpha-dehydrogenase / 0.710
1i3l NADUDP-glucose 4-epimerase / 0.709
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.706
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.706
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.706
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.706
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.705
1ek5 NADUDP-glucose 4-epimerase / 0.704
2yut NAPPutative short-chain oxidoreductase / 0.704
5jyd NADShort chain dehydrogenase / 0.704
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.703
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.703
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.702
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.702
4u7w NDPMxaA / 0.701
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.700
3ajr NADNDP-sugar epimerase / 0.700
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.699
2jah NDPClavaldehyde dehydrogenase / 0.698
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.698
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.696
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.696
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.696
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.695
4egb NADdTDP-glucose 4,6-dehydratase / 0.694
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.692
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.692
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.691
1ae1 NAPTropinone reductase 1 / 0.690
3aw9 NADNAD-dependent epimerase/dehydratase / 0.690
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
3r3s NADPutative oxidoreductase / 0.689
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.689
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
2ewm NAD(S)-1-Phenylethanol dehydrogenase 1.1.1.311 0.686
2c20 NADUDP-glucose 4-epimerase / 0.684
3geg NADShort-chain dehydrogenase/reductase SDR / 0.684
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.683
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.682
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.679
3lqf NADGalactitol dehydrogenase / 0.679
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.679
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.676
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.676
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.674
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.674
5d2e NAPMlnE / 0.674
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.673
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
3wmx NADNAD dependent epimerase/dehydratase / 0.671
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
2p5u NADUDP-glucose 4-epimerase / 0.669
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.667
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.666
2p5y NADUDP-glucose 4-epimerase / 0.666
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.662
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.661
2i9p NAD3-hydroxyisobutyrate dehydrogenase, mitochondrial 1.1.1.31 0.660
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.660
4b4o NDPEpimerase family protein SDR39U1 / 0.660
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.660
3oa2 NADUDP-N-acetyl-2-amino-2-deoxy-D-glucuronate oxidase / 0.658
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.657
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.656
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.655
1iy8 NADLevodione reductase / 0.655
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.655
2z95 NDPGDP-mannose 4,6-dehydratase / 0.654
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.654
4nd2 A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.654
1npt NADGlyceraldehyde-3-phosphate dehydrogenase / 0.651
1u7h NADPutative ornithine cyclodeaminase / 0.651
3mvq NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 0.651
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.651
5fa5 MTAProtein arginine N-methyltransferase 5 / 0.651
1pzh NADLactate dehydrogenase / 0.650
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.650
5lc1 NADL-threonine 3-dehydrogenase / 0.650