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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nff NAD 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 1.252
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 1.116
3sx2 NADUncharacterized protein / 1.058
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 1.050
3s55 NADPutative short-chain dehydrogenase/reductase / 1.026
3tsc NADUncharacterized protein / 0.961
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.931
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.907
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.901
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.873
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.869
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.865
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.859
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.853
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.848
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.847
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.841
1iy8 NADLevodione reductase / 0.841
2wsb NADGalactitol dehydrogenase / 0.839
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.836
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.830
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.828
3wds NADNADH-dependent quinuclidinone reductase / 0.827
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.817
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.817
1orr NADCDP-paratose 2-epimerase / 0.815
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.814
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.812
3p19 NDPPutative blue fluorescent protein / 0.810
3l77 NJPShort-chain alcohol dehydrogenase / 0.809
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.808
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.806
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.806
2wdz NADGalactitol dehydrogenase / 0.805
3tn7 NJPShort-chain alcohol dehydrogenase / 0.803
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.803
3o26 NDPSalutaridine reductase / 0.802
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.802
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.798
2jah NDPClavaldehyde dehydrogenase / 0.797
5jla NADPutative short-chain dehydrogenase/reductase / 0.796
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.795
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.795
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.795
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.793
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.793
3sju NDPKeto reductase / 0.792
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.789
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.789
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.786
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.784
4bmv NAPShort-chain dehydrogenase / 0.784
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.783
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.779
4j7u NAPSepiapterin reductase 1.1.1.153 0.777
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.776
1x7h NDPPutative ketoacyl reductase 1.3.1 0.775
3qrw NDPPutative ketoacyl reductase 1.3.1 0.774
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.773
2bd0 NAPSepiapterin reductase / 0.772
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.771
4yag NAIC alpha-dehydrogenase / 0.771
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.770
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.768
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.767
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.767
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.767
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.767
4hwk NAPSepiapterin reductase 1.1.1.153 0.766
3ai3 NDPNADPH-sorbose reductase / 0.763
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.763
4wec NADShort chain dehydrogenase / 0.763
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.762
4u7w NDPMxaA / 0.762
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.761
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.761
2p5y NADUDP-glucose 4-epimerase / 0.761
1pr9 NAPL-xylulose reductase 1.1.1.10 0.759
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.758
1oaa NAPSepiapterin reductase 1.1.1.153 0.758
4fn4 NADShort chain dehydrogenase / 0.757
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.756
3icp NADNAD-dependent epimerase/dehydratase / 0.756
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.755
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.754
1zem NADXylitol dehydrogenase / 0.754
3uce NDPDehydrogenase / 0.754
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.753
1i3l NADUDP-glucose 4-epimerase / 0.752
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.752
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.751
1x7g NAPPutative ketoacyl reductase 1.3.1 0.750
4j7x NAPSepiapterin reductase 1.1.1.153 0.750
4kwh NAPReductase homolog / 0.750
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.747
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.747
4qec NAPElxO / 0.747
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.746
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.746
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.744
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.743
4b79 NADProbable short-chain dehydrogenase / 0.743
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.742
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.742
3geg NADShort-chain dehydrogenase/reductase SDR / 0.742
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.740
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.739
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.738
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.738
2c29 NAPDihydroflavonol 4-reductase / 0.737
2yut NAPPutative short-chain oxidoreductase / 0.736
3a9w NADNDP-sugar epimerase / 0.736
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.735
3ai2 NDPNADPH-sorbose reductase / 0.735
3aw9 NADNAD-dependent epimerase/dehydratase / 0.735
3ko8 NADNAD-dependent epimerase/dehydratase / 0.735
4qed NAPElxO / 0.734
1sny NAPLD36273p / 0.730
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.729
1w4z NAPPutative ketoacyl reductase 1.3.1 0.727
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.726
4dbz NDPPutative ketoacyl reductase 1.3.1 0.726
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.726
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.726
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.725
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.724
2c20 NADUDP-glucose 4-epimerase / 0.724
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.724
3a4v NADNDP-sugar epimerase / 0.724
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.722
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.722
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.721
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.721
4yai NAIC alpha-dehydrogenase / 0.721
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.719
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.719
1ek5 NADUDP-glucose 4-epimerase / 0.718
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.718
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.717
3orf NADDihydropteridine reductase 1.5.1.34 0.717
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.717
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.715
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.714
3ak4 NADNADH-dependent quinuclidinone reductase / 0.714
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.713
4egb NADdTDP-glucose 4,6-dehydratase / 0.711
3ajr NADNDP-sugar epimerase / 0.710
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.709
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.709
1ae1 NAPTropinone reductase 1 / 0.708
2yy7 NADL-threonine dehydrogenase / 0.707
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.706
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.705
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.705
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.704
3tox NAPPutative oxidoreductase / 0.701
1ipe NDPTropinone reductase 2 1.1.1.236 0.699
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.699
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.699
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.699
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.697
4yac NAIC alpha-dehydrogenase / 0.697
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.696
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.695
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.694
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.693
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.693
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.691
1xkq NDPUncharacterized protein / 0.691
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
3wmx NADNAD dependent epimerase/dehydratase / 0.690
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.689
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.689
3a1n NADNDP-sugar epimerase / 0.688
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.688
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.686
4hxy NDPPlm1 / 0.686
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.684
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.684
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.683
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.683
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.681
5jyd NADShort chain dehydrogenase / 0.681
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.680
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.680
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.677
2p5u NADUDP-glucose 4-epimerase / 0.676
3ec7 NADInositol 2-dehydrogenase / 0.676
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.676
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.675
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.675
3lqf NADGalactitol dehydrogenase / 0.673
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.673
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.672
3r3s NADPutative oxidoreductase / 0.671
4imp NDPPolyketide synthase extender modules 3-4 / 0.671
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
4clo NAPPteridine reductase / 0.670
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.669
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.668
2z1m NDPGDP-mannose 4,6-dehydratase / 0.667
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.663
1mp5 UPGGlucose-1-phosphate thymidylyltransferase 2.7.7.24 0.662
3wfj NAD2-dehydropantoate 2-reductase / 0.662
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.662
2ewm NAD(S)-1-Phenylethanol dehydrogenase 1.1.1.311 0.661
2o4c NADErythronate-4-phosphate dehydrogenase / 0.661
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.661
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.661
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.661
4idg NADPutative UDP-glucose 4-epimerase / 0.661
4y9d NAIC alpha-dehydrogenase / 0.661
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.661
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.660
1hdo NAPFlavin reductase (NADPH) / 0.659
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.659
4j4b NAIUncharacterized protein / 0.659
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.658
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.658
5d2e NAPMlnE / 0.658
5lc1 NADL-threonine 3-dehydrogenase / 0.658
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.656
1g1a NADdTDP-glucose 4,6-dehydratase / 0.655
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.655
4plp NADHomospermidine synthase 2.5.1.44 0.655
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.654
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.652
4jbi NDPAlcohol dehydrogenase (Zinc) / 0.652
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.651
2bgl NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.651
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.651
3gvi ADPMalate dehydrogenase / 0.651
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.651
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.651
4cuk NAID-lactate dehydrogenase / 0.651
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.650
2yqz SAMUncharacterized protein / 0.650