sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1d2s | DHT | Sex hormone-binding globulin |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1d2s | DHT | Sex hormone-binding globulin | / | 1.000 | |
| 1f5f | DHT | Sex hormone-binding globulin | / | 0.565 | |
| 1lhv | NOG | Sex hormone-binding globulin | / | 0.551 | |
| 1fp2 | HMO | Isoflavone-7-O-methyltransferase 8 | 2.1.1.150 | 0.506 | |
| 3gwf | FAD | Cyclohexanone monooxygenase | / | 0.490 | |
| 4jx1 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.477 | |
| 1lhw | ESM | Sex hormone-binding globulin | / | 0.475 | |
| 2chz | 093 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.475 | |
| 1mkd | ZAR | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.474 | |
| 4jvf | 17X | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | / | 0.472 | |
| 1ay0 | TPP | Transketolase 1 | 2.2.1.1 | 0.470 | |
| 5cwa | 0GA | Anthranilate synthase component 1 | 4.1.3.27 | 0.468 | |
| 2chx | 090 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.466 | |
| 5d12 | G97 | Proto-oncogene tyrosine-protein kinase Src | 2.7.10.2 | 0.466 | |
| 4bch | T7Z | Cyclin-dependent kinase 9 | 2.7.11.22 | 0.464 | |
| 4ia3 | BIV | Vitamin D3 receptor A | / | 0.464 | |
| 3bfa | 9OD | Odorant binding protein ASP1 | / | 0.463 | |
| 2qd4 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.462 | |
| 4l4c | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.462 | |
| 1h66 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.461 | |
| 1pl8 | NAD | Sorbitol dehydrogenase | 1.1.1.14 | 0.461 | |
| 2feu | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.461 | |
| 2bxm | IMN | Serum albumin | / | 0.460 | |
| 1m13 | HYF | Nuclear receptor subfamily 1 group I member 2 | / | 0.459 | |
| 1u59 | STU | Tyrosine-protein kinase ZAP-70 | 2.7.10.2 | 0.459 | |
| 3tm5 | SFG | Uncharacterized protein | / | 0.459 | |
| 4jvb | 1M0 | Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta | / | 0.458 | |
| 1kbo | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.457 | |
| 3kpz | ZNE | Vitamin D3 receptor | / | 0.457 | |
| 1fmj | RTL | Retinol dehydratase | / | 0.456 | |
| 3pe6 | ZYH | Monoglyceride lipase | / | 0.456 | |
| 3r04 | UNQ | Serine/threonine-protein kinase pim-1 | 2.7.11.1 | 0.456 | |
| 4bzo | 676 | Serine/threonine-protein kinase pim-1 | 2.7.11.1 | 0.456 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.455 | |
| 1phg | MYT | Camphor 5-monooxygenase | 1.14.15.1 | 0.455 | |
| 3gc9 | B45 | Mitogen-activated protein kinase 11 | 2.7.11.24 | 0.455 | |
| 2zaw | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.454 | |
| 3mdv | CL6 | Cholesterol 24-hydroxylase | / | 0.454 | |
| 3th8 | TH9 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) | 2.5.1.31 | 0.454 | |
| 4epl | JAI | Jasmonic acid-amido synthetase JAR1 | 6.3.2 | 0.454 | |
| 2b00 | GCH | Phospholipase A2, major isoenzyme | 3.1.1.4 | 0.453 | |
| 2xvw | 9NR | Serum albumin | / | 0.453 | |
| 3apf | BMW | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.453 | |
| 3inx | JZC | Heat shock protein HSP 90-alpha | / | 0.453 | |
| 3qlr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 3vt7 | VDX | Vitamin D3 receptor | / | 0.453 | |
| 3w0g | W07 | Vitamin D3 receptor | / | 0.453 | |
| 4g1z | 0VP | Vitamin D3 receptor A | / | 0.453 | |
| 4lxh | C1E | Alpha/beta hydrolase fold | / | 0.453 | |
| 1txi | TX5 | Vitamin D3 receptor | / | 0.452 | |
| 2bxq | IMN | Serum albumin | / | 0.452 | |
| 4l4d | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.452 | |
| 1e7v | LY2 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.451 | |
| 3bfb | 9OD | Pheromone-binding protein ASP1 | / | 0.451 | |
| 3csd | EMO | Putative ketoacyl reductase | 1.3.1 | 0.451 | |
| 3vt6 | 5YI | Vitamin D3 receptor | / | 0.451 | |
| 4lb2 | DM5 | Serum albumin | / | 0.451 | |
| 1x8l | OXR | Retinol dehydratase | / | 0.450 | |
| 1y4l | SVR | Basic phospholipase A2 homolog 2 | / | 0.450 | |
| 4h4q | FAD | Biphenyl dioxygenase ferredoxin reductase subunit | / | 0.450 | |
| 1ouy | 094 | Mitogen-activated protein kinase 14 | / | 0.449 | |
| 3iaa | TYD | CalG2 | / | 0.449 | |
| 3w1w | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.449 | |
| 4tzk | 641 | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.449 | |
| 4xe6 | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.449 | |
| 5a4k | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.449 | |
| 1vzd | CB3 | Thymidylate synthase | / | 0.448 | |
| 2qbl | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.448 | |
| 3b9l | AZZ | Serum albumin | / | 0.448 | |
| 3fwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.448 | |
| 3vew | ADP | nebramycin 5' synthase | 6.1.2.2 | 0.448 | |
| 4enh | FVX | Cholesterol 24-hydroxylase | / | 0.448 | |
| 4i8v | BHF | Cytochrome P450 1A1 | 1.14.14.1 | 0.448 | |
| 4nky | 3QZ | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.448 | |
| 4nmb | FAD | Bifunctional protein PutA | / | 0.448 | |
| 1ndz | FR5 | Adenosine deaminase | 3.5.4.4 | 0.447 | |
| 3we4 | 5FI | Ribosomal protein S6 kinase beta-1 | 2.7.11.1 | 0.447 | |
| 4g3j | VNT | Lanosterol 14-alpha-demethylase | / | 0.447 | |
| 4hle | 17V | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.447 | |
| 4i6g | FAD | Cryptochrome-2 | / | 0.447 | |
| 4jx1 | CAH | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 4nkv | AER | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.447 | |
| 1fml | RTL | Retinol dehydratase | / | 0.446 | |
| 2m56 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.446 | |
| 3bbt | FMM | Receptor tyrosine-protein kinase erbB-4 | 2.7.10.1 | 0.446 | |
| 3t3r | 9PL | Cytochrome P450 2A6 | 1.14.13 | 0.446 | |
| 3uxy | NAD | Short-chain dehydrogenase/reductase SDR | / | 0.446 | |
| 4okx | 198 | Androgen receptor | / | 0.446 | |
| 4tzt | 468 | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.446 | |
| 1fpq | SAM | Isoliquiritigenin 2'-O-methyltransferase | / | 0.445 | |
| 1ro6 | ROL | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.445 | |
| 1yhs | STU | Serine/threonine-protein kinase pim-1 | 2.7.11.1 | 0.445 | |
| 1zga | HMK | Isoflavone 4'-O-methyltransferase | / | 0.445 | |
| 2itt | AEE | Epidermal growth factor receptor | 2.7.10.1 | 0.445 | |
| 2nv6 | ZID | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.445 | |
| 3oqk | S52 | Renin | 3.4.23.15 | 0.445 | |
| 3own | 3OW | Renin | 3.4.23.15 | 0.445 | |
| 4bzn | UGX | Serine/threonine-protein kinase pim-1 | 2.7.11.1 | 0.445 | |
| 4fhk | 0U0 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | 2.7.1.153 | 0.445 | |
| 4xsv | C5P | Ethanolamine-phosphate cytidylyltransferase | 2.7.7.14 | 0.445 | |
| 5dcy | NAP | Iridoid synthase | 1.3.1.99 | 0.445 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.444 | |
| 2ieb | ZID | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.444 | |
| 4l43 | 5FI | Ribosomal protein S6 kinase beta-1 | 2.7.11.1 | 0.444 | |
| 4lrz | ADP | PEP-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL | 2.7 | 0.444 | |
| 5ajq | DB8 | Serine/threonine-protein kinase 10 | 2.7.11.1 | 0.444 | |
| 1h69 | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.443 | |
| 1kdm | DHT | Sex hormone-binding globulin | / | 0.443 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.443 | |
| 3mkn | DNB | Pyrimidine-specific ribonucleoside hydrolase RihB | / | 0.443 | |
| 3vtb | TKA | Vitamin D3 receptor | / | 0.443 | |
| 3vtd | TKD | Vitamin D3 receptor | / | 0.443 | |
| 4fyn | 0VE | Tyrosine-protein kinase SYK | 2.7.10.2 | 0.443 | |
| 4l49 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.443 | |
| 4yr9 | NAD | L-threonine 3-dehydrogenase, mitochondrial | 1.1.1.103 | 0.443 | |
| 5cp4 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.443 | |
| 5hs1 | VOR | Lanosterol 14-alpha demethylase | / | 0.443 | |
| 2zba | ZBA | Trichothecene 3-O-acetyltransferase | / | 0.442 | |
| 3a78 | 3EV | Vitamin D3 receptor | / | 0.442 | |
| 3pm0 | BHF | Cytochrome P450 1B1 | / | 0.442 | |
| 3qj5 | 022 | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.442 | |
| 3zu2 | NAI | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.442 | |
| 4bcq | TJF | Cyclin-dependent kinase 2 | 2.7.11.22 | 0.442 | |
| 4mih | FAD | Pyranose 2-oxidase | 1.1.3.10 | 0.442 | |
| 3uzc | T4E | Adenosine receptor A2a | / | 0.442 | |
| 1iwi | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.441 | |
| 1k6p | XN3 | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
| 1kbq | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.441 | |
| 1og5 | SWF | Cytochrome P450 2C9 | / | 0.441 | |
| 2itp | AEE | Epidermal growth factor receptor | 2.7.10.1 | 0.441 | |
| 2vf0 | F89 | Thymidylate synthase | / | 0.441 | |
| 3a99 | ANP | Serine/threonine-protein kinase pim-1 | 2.7.11.1 | 0.441 | |
| 3ans | S38 | Bifunctional epoxide hydrolase 2 | 3.3.2.10 | 0.441 | |
| 3r35 | 4CO | 4-hydroxybenzoyl-CoA thioesterase | 3.1.2.23 | 0.441 | |
| 4b13 | X25 | Glycylpeptide N-tetradecanoyltransferase | / | 0.441 | |
| 4ge4 | 0KE | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.441 | |
| 4l42 | 5FI | Ribosomal protein S6 kinase beta-1 | 2.7.11.1 | 0.441 | |
| 3oaf | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 3w0h | W12 | Vitamin D3 receptor | / | 0.440 | |
| 3w0j | T08 | Vitamin D3 receptor | / | 0.440 | |
| 4f7l | 0SO | Cyclin-dependent kinase 8 | 2.7.11.22 | 0.440 | |
| 4qa2 | SHH | Histone deacetylase 8 | 3.5.1.98 | 0.440 |