Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

5cwa

2.100 Å

X-ray

2015-07-28

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Anthranilate synthase component 1
ID:TRPE_MYCTO
AC:P9WFX2
Organism:Mycobacterium tuberculosis
Reign:Bacteria
TaxID:83331
EC Number:4.1.3.27


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:52.027
Number of residues:27
Including
Standard Amino Acids: 26
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.0921404.000

% Hydrophobic% Polar
40.3859.62
According to VolSite

Ligand :
5cwa_1 Structure
HET Code: 0GA
Formula: C11H8O6
Molecular weight: 236.178 g/mol
DrugBank ID: -
Buried Surface Area:58.2 %
Polar Surface area: 109.72 Å2
Number of
H-Bond Acceptors: 6
H-Bond Donors: 1
Rings: 1
Aromatic rings: 1
Anionic atoms: 2
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 4

Mass center Coordinates

XYZ
49.7921-45.4526-2.78729


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
CAHCG1VAL- 2564.140Hydrophobic
CAACGPRO- 3063.90Hydrophobic
CAACBGLU- 3074.40Hydrophobic
CAACG2ILE- 3224.180Hydrophobic
CAJCD1LEU- 4163.960Hydrophobic
CAHCD2LEU- 4163.790Hydrophobic
OAEOHTYR- 4392.54165.02H-Bond
(Protein Donor)
CAACD1ILE- 4584.50Hydrophobic
CAOCD1ILE- 4583.820Hydrophobic
CAQCG2ILE- 4584.090Hydrophobic
OAENGLY- 4732.86143.93H-Bond
(Protein Donor)
OABNZLYS- 4923.08136.2H-Bond
(Protein Donor)
OABNZLYS- 4923.080Ionic
(Protein Cationic)
DuArNZLYS- 4923.46166.16Pi/Cation
CAOCDLYS- 4924.050Hydrophobic