Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Protein Data Bank Entry:

1e7v

2.400 Å

X-ray

2000-09-08

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
ID:PK3CG_PIG
AC:O02697
Organism:Sus scrofa
Reign:Eukaryota
TaxID:9823
EC Number:2.7.1.153


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:57.052
Number of residues:28
Including
Standard Amino Acids: 27
Non Standard Amino Acids: 0
Water Molecules: 1
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
1.032624.375

% Hydrophobic% Polar
56.2243.78
According to VolSite

Ligand :
1e7v_1 Structure
HET Code: LY2
Formula: C19H17NO3
Molecular weight: 307.343 g/mol
DrugBank ID: DB02656
Buried Surface Area:61.43 %
Polar Surface area: 38.77 Å2
Number of
H-Bond Acceptors: 4
H-Bond Donors: 0
Rings: 4
Aromatic rings: 2
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 2

Mass center Coordinates

XYZ
20.951762.328621.4085


Binding mode :
What is Poseview ?
  • 2D View
  • 3D View
Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C25SDMET- 8043.440Hydrophobic
C25CD1ILE- 8314.180Hydrophobic
C2CDLYS- 8334.360Hydrophobic
C15CD2TYR- 8673.570Hydrophobic
C16CGTYR- 8673.590Hydrophobic
C15CG2ILE- 8794.490Hydrophobic
C18CG2ILE- 8814.220Hydrophobic
C16CG2VAL- 8823.570Hydrophobic
C18CBVAL- 8824.20Hydrophobic
O17NVAL- 8822.53164.68H-Bond
(Protein Donor)
C22CG2THR- 8873.660Hydrophobic
C19SDMET- 9533.520Hydrophobic
C22CEMET- 9533.960Hydrophobic
C15CE1PHE- 9613.760Hydrophobic
C15CG2ILE- 9633.630Hydrophobic
C3CD1ILE- 9634.130Hydrophobic
C5CD1ILE- 9634.260Hydrophobic
C21CD1ILE- 9634.340Hydrophobic
C2CBASP- 9643.840Hydrophobic