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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

4fhk

3.000 Å

X-ray

2012-06-06

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
ID:PK3CG_HUMAN
AC:P48736
Organism:Homo sapiens
Reign:Eukaryota
TaxID:9606
EC Number:2.7.1.153


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:70.093
Number of residues:29
Including
Standard Amino Acids: 29
Non Standard Amino Acids: 0
Water Molecules: 0
Cofactors:
Metals:

Cavity properties

LigandabilityVolume (Å3)
0.540583.875

% Hydrophobic% Polar
46.8253.18
According to VolSite

Ligand :
4fhk_1 Structure
HET Code: 0U0
Formula: C18H15N11
Molecular weight: 385.385 g/mol
DrugBank ID: -
Buried Surface Area:65.26 %
Polar Surface area: 134.49 Å2
Number of
H-Bond Acceptors: 9
H-Bond Donors: 3
Rings: 5
Aromatic rings: 5
Anionic atoms: 0
Cationic atoms: 0
Rule of Five Violation: 1
Rotatable Bonds: 5

Mass center Coordinates

XYZ
21.216614.41521.7415


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
C8CD1ILE- 8313.770Hydrophobic
N3NZLYS- 8333.3149.41H-Bond
(Protein Donor)
N9OD2ASP- 8363.21156.96H-Bond
(Ligand Donor)
C18CGTYR- 8673.570Hydrophobic
C18CG2ILE- 8794.30Hydrophobic
N7OVAL- 8823.13148H-Bond
(Ligand Donor)
N5NVAL- 8823.24163.2H-Bond
(Protein Donor)
C18CG2VAL- 8823.810Hydrophobic
C8SDMET- 9533.910Hydrophobic
C18CE1PHE- 9613.80Hydrophobic
C18CG2ILE- 9633.910Hydrophobic