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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4c9pCAMCytochrome P450

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4c9pCAMCytochrome P450/1.000
3lxiCAMCytochrome P450/0.672
2a1mCAMCamphor 5-monooxygenase1.14.15.10.648
1t88CAMCamphor 5-monooxygenase1.14.15.10.641
1t87CAMCamphor 5-monooxygenase1.14.15.10.639
1dz6CAMCamphor 5-monooxygenase1.14.15.10.634
2cppCAMCamphor 5-monooxygenase1.14.15.10.631
1o76CAMCamphor 5-monooxygenase1.14.15.10.628
4g3rCAMCamphor 5-monooxygenase1.14.15.10.628
4l4aCAMCamphor 5-monooxygenase1.14.15.10.626
1yrdCAMCamphor 5-monooxygenase1.14.15.10.625
1dz8CAMCamphor 5-monooxygenase1.14.15.10.624
1nooCAHCamphor 5-monooxygenase1.14.15.10.621
5cp4CAMCamphor 5-monooxygenase1.14.15.10.621
4cp4CAMCamphor 5-monooxygenase1.14.15.10.619
1iwjCAMCamphor 5-monooxygenase1.14.15.10.618
3fwgCAMCamphor 5-monooxygenase1.14.15.10.617
4c9oCAMCytochrome P450/0.617
1iwiCAMCamphor 5-monooxygenase1.14.15.10.616
2z97CAMCamphor 5-monooxygenase1.14.15.10.616
3wrhCAMCamphor 5-monooxygenase1.14.15.10.616
4l4cCAMCamphor 5-monooxygenase1.14.15.10.616
2a1nCAMCamphor 5-monooxygenase1.14.15.10.615
4l4bCAMCamphor 5-monooxygenase1.14.15.10.613
2m56CAMCamphor 5-monooxygenase1.14.15.10.612
1t85CAMCamphor 5-monooxygenase1.14.15.10.611
3fwfCAMCamphor 5-monooxygenase1.14.15.10.611
4kkyCAMCamphor 5-monooxygenase1.14.15.10.611
4l49CAMCamphor 5-monooxygenase1.14.15.10.610
4l4dCAMCamphor 5-monooxygenase1.14.15.10.610
1phgMYTCamphor 5-monooxygenase1.14.15.10.609
1dz4CAMCamphor 5-monooxygenase1.14.15.10.608
3fwjCAMCamphor 5-monooxygenase1.14.15.10.608
3fwiCAMCamphor 5-monooxygenase1.14.15.10.607
3wrlCAMCamphor 5-monooxygenase1.14.15.10.606
1t86CAMCamphor 5-monooxygenase1.14.15.10.603
2zawCAMCamphor 5-monooxygenase1.14.15.10.602
3l63CAMCamphor 5-monooxygenase1.14.15.10.602
1yrcCAMCamphor 5-monooxygenase1.14.15.10.601
2feuCAMCamphor 5-monooxygenase1.14.15.10.601
2zaxCAMCamphor 5-monooxygenase1.14.15.10.600
3wrmCAMCamphor 5-monooxygenase1.14.15.10.599
3wrjCAMCamphor 5-monooxygenase1.14.15.10.598
6cp4CAMCamphor 5-monooxygenase1.14.15.10.598
3cppCAMCamphor 5-monooxygenase1.14.15.10.597
2qblCAMCamphor 5-monooxygenase1.14.15.10.596
2qbmCAMCamphor 5-monooxygenase1.14.15.10.594
4ek1CAMCamphor 5-monooxygenase1.14.15.10.594
2qboCAMCamphor 5-monooxygenase1.14.15.10.592
2a1oCAMCamphor 5-monooxygenase1.14.15.10.587
2qbnCAMCamphor 5-monooxygenase1.14.15.10.586
1uyuCAMCamphor 5-monooxygenase1.14.15.10.583
1gebCAMCamphor 5-monooxygenase1.14.15.10.579
4l4fCAMCamphor 5-monooxygenase1.14.15.10.578
4jx1CAMCamphor 5-monooxygenase1.14.15.10.576
4jx1CAHCamphor 5-monooxygenase1.14.15.10.572
4l4eCAMCamphor 5-monooxygenase1.14.15.10.572
1phePIYCamphor 5-monooxygenase1.14.15.10.549
3p6oETGCamphor 5-monooxygenase1.14.15.10.544
4tuvCPZCytochrome P450 1191.140.538
2zuiCAMCamphor 5-monooxygenase1.14.15.10.532
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.518
3mdmFJZCholesterol 24-hydroxylase/0.515
4enhFVXCholesterol 24-hydroxylase/0.513
3mdvCL6Cholesterol 24-hydroxylase/0.509
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.507
3t3r9PLCytochrome P450 2A61.14.130.506
5hs1VORLanosterol 14-alpha demethylase/0.506
4lhtCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.503
1jioDEB6-deoxyerythronolide B hydroxylase/0.502
4ejh0QACytochrome P450 2A131.14.14.10.501
3tk3CPZCytochrome P450 2B41.14.14.10.500
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.497
3p99LNPLanosterol 14-alpha-demethylase/0.496
1jipKTN6-deoxyerythronolide B hydroxylase/0.493
1suoCPZCytochrome P450 2B41.14.14.10.489
2w0bCMWLanosterol 14-alpha demethylase1.14.13.700.489
4ia3BIVVitamin D3 receptor A/0.488
2zbaZBATrichothecene 3-O-acetyltransferase/0.485
3ibdCPZCytochrome P450 2B61.14.130.485
4y8wSTRSteroid 21-hydroxylase/0.484
1t2bCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.483
4uymVOR14-alpha sterol demethylase Cyp51B/0.483
4j6cSTRCytochrome P450 monooxygenase/0.482
4r20AERCytochrome P450 family 17 polypeptide 2/0.481
3pb3SAH16S rRNA (adenine(1408)-N(1))-methyltransferase2.1.1.1800.479
3s79ASDAromatase1.14.14.140.479
2vn0TDZCytochrome P450 2C8/0.477
3gxoMQAMitomycin biosynthesis 6-O-methyltransferase/0.477
4l6gCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.477
1eupASD6-deoxyerythronolide B hydroxylase/0.475
2x7gPVBSRSF protein kinase 22.7.11.10.475
3a1l2CCCytochrome P450/0.473
3nr4PYVAbscisic acid receptor PYL2/0.472
1ouk084Mitogen-activated protein kinase 14/0.470
2nnhREACytochrome P450 2C8/0.470
2y3sTIRTamL/0.469
3t3q9PLCytochrome P450 2A61.14.130.469
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.468
4k9v6AWCytochrome P450 3A4/0.468
4fmxCNL1,8-cineole 2-endo-monooxygenase1.14.13.1560.467
4qq3XMPInosine-5'-monophosphate dehydrogenase/0.467
3ns2PYVAbscisic acid receptor PYL2/0.466
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.466
1dg5TOPDihydrofolate reductase1.5.1.30.465
4q72FADBifunctional protein PutA/0.465
5c8wPCGcGMP-dependent protein kinase 22.7.11.120.465
3kdjA8SAbscisic acid receptor PYL1/0.464
3tjsD0RCytochrome P450 3A4/0.464
4ia7BIVVitamin D3 receptor A/0.464
1m13HYFNuclear receptor subfamily 1 group I member 2/0.463
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.462
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.461
1pkfEPDEpothilone C/D epoxidase1.140.461
3vt5YI2Vitamin D3 receptor/0.461
3zuyTCHTransporter/0.460
1tv8SAMGTP 3',8-cyclase4.1.99.180.459
2eauCZASarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.459
2hcdBIVVitamin D3 receptor A/0.459
3nj0PYVAbscisic acid receptor PYL2/0.459
4g1z0VPVitamin D3 receptor A/0.459
1ouy094Mitogen-activated protein kinase 14/0.458
2hb7O1CVitamin D3 receptor/0.458
2xa4AZ5Tyrosine-protein kinase JAK2/0.458
3p62FMNPentaerythritol tetranitrate reductase/0.458
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.457
1wbpADPSRSF protein kinase 12.7.11.10.457
2ktdPUCProstaglandin-H2 D-isomerase5.3.99.20.457
3qlxQLRUncharacterized protein/0.457
4h9814QUncharacterized protein/0.457
4l425FIRibosomal protein S6 kinase beta-12.7.11.10.457
1u3dFADCryptochrome-1/0.456
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.456
2y60M8FIsopenicillin N synthase1.21.3.10.456
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.456
3wecAUICytochrome P450/0.456
1og5SWFCytochrome P450 2C9/0.455
2hasC3OVitamin D3 receptor/0.455
2ph5NADHomospermidine synthase/0.455
3a4oSTUTyrosine-protein kinase Lyn2.7.10.20.455
1oc1ASVIsopenicillin N synthase1.21.3.10.454
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.454
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
3qaqQAQPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.454
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.454
2drcMTXDihydrofolate reductase1.5.1.30.453
2nv6ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.453
2uxpCLMHTH-type transcriptional regulator TtgR/0.453
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
2rkvZBATrichothecene 3-O-acetyltransferase/0.452
3gphOIDCytochrome P450 2E11.14.130.452
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.452
1u3cFADCryptochrome-1/0.451
1zmdNAIDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.451
2jcvNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.451
3ii43IIDihydrolipoyl dehydrogenase1.8.1.40.451
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.450
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.450
1fmjRTLRetinol dehydratase/0.450
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.450
3bc3OPTCathepsin L13.4.22.150.450
3och2MXDihydrofolate reductase1.5.1.30.450
4qmnDB8Serine/threonine-protein kinase 242.7.11.10.450
4ylfFADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog/0.450
1k6cMK1Gag-Pol polyprotein3.4.23.160.449
1nhz486Glucocorticoid receptor/0.449
1q5dEPBEpothilone C/D epoxidase1.140.449
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
3h8bNSYCathepsin L13.4.22.150.449
3opdHIEHeat shock protein 83/0.449
3r7iX9ICyclin-dependent kinase 22.7.11.220.449
3r7uX96Cyclin-dependent kinase 22.7.11.220.449
3zoiM2WIsopenicillin N synthase1.21.3.10.449
4ejgNCTCytochrome P450 2A131.14.14.10.449
4ia1BIVVitamin D3 receptor A/0.449
4j1rI5RGlycogen synthase kinase-3 beta2.7.11.260.449
4xiwAZMCarbonic anhydrase, alpha type/0.449
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.448
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
3iqzH4MF420-dependent methylenetetrahydromethanopterin dehydrogenase1.5.98.10.448
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.448
4ia2BIVVitamin D3 receptor A/0.448
1bvrTHTEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.447
1k6tXN1Gag-Pol polyprotein3.4.23.160.447
2i40BLZCyclin-dependent kinase 22.7.11.220.447
2itqITQEpidermal growth factor receptor2.7.10.10.447
2izrBRKCasein kinase I isoform gamma-32.7.11.10.447
3eel53TUncharacterized protein/0.447
3fp0FP015-O-acetyltransferase/0.447
3ibqATPPyridoxal kinase/0.447
3r7yZ04Cyclin-dependent kinase 22.7.11.220.447
3zk5Z18Cytochrome P450 monooxygenase PikC/0.447
4nmbFADBifunctional protein PutA/0.447
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.446
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.446
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.446
3w5rLOAVitamin D3 receptor/0.446
4lxhC1EAlpha/beta hydrolase fold/0.446
4ly91YYGlucokinase regulatory protein/0.446
1bwsNDPGDP-L-fucose synthase/0.445
1dyhDZFDihydrofolate reductase1.5.1.30.445
1m8h6NINitric oxide synthase, inducible1.14.13.390.445
1w2xRCPAcetyl-CoA carboxylase/0.445
2cig1DGDihydrofolate reductase1.5.1.30.445
2ovhAS0Progesterone receptor/0.445
3d0bSNXHeat shock protein HSP 90-alpha/0.445
3kb0A8SAbscisic acid receptor PYL2/0.445
3le62BZCyclin-dependent kinase 22.7.11.220.445
4gyzD5MTyrosyl-DNA phosphodiesterase 23.1.40.445
4i8vBHFCytochrome P450 1A11.14.14.10.445
4j6bPLOCytochrome P450 monooxygenase/0.445
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.445
4nc3ERM5-hydroxytryptamine receptor 2B/0.445
4o4eATPKinase/0.445
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
1yonA2R2-dehydropantoate 2-reductase1.1.1.1690.444
2npnSAMPutative cobalamin synthesis related protein/0.444
3a14NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase/0.444
3anmNDP1-deoxy-D-xylulose 5-phosphate reductoisomerase1.1.1.2670.444
3ey9TDPPyruvate dehydrogenase [ubiquinone]1.2.5.10.444
3flwFLWMitogen-activated protein kinase 14/0.444
3gggNADPrephenate dehydrogenase/0.444
3lu8IQXSerum albumin/0.444
3nux3NVCyclin-dependent kinase 62.7.11.220.444
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.444
3tdaPN0Cytochrome P450 2D6/0.444
4cztCPSCBL-interacting serine/threonine-protein kinase 232.7.11.10.444
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
4g1d0VKVitamin D3 receptor A/0.444
4g7gVFVLanosterol 14-alpha-demethylase/0.444
4h9506UDihydrofolate reductase1.5.1.30.444
4ruoBIVVitamin D3 receptor A/0.444
1bl6SB6Mitogen-activated protein kinase 14/0.443
1cd2FOLDihydrofolate reductase1.5.1.30.443
1v1k3FPCyclin-dependent kinase 22.7.11.220.443
1zmcNADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.443
2e9cB75Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.443
3bheBZNGag-Pol polyprotein3.4.23.160.443
3kf7L9GMitogen-activated protein kinase 14/0.443
3ml8ML8Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
3otqMZLBifunctional epoxide hydrolase 23.3.2.100.443
4cd2FOLDihydrofolate reductase1.5.1.30.443
4dfrMTXDihydrofolate reductase1.5.1.30.443
4fuyEK2Mitogen-activated protein kinase 12.7.11.240.443
4gg70J8Hepatocyte growth factor receptor2.7.10.10.443
1me7MOAInosine-5'-monophosphate dehydrogenase/0.442
1nhhANPDNA mismatch repair protein MutL/0.442
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.442
1uy7PU4Heat shock protein HSP 90-alpha/0.442
2chw039Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
2zazGK1Mitogen-activated protein kinase 14/0.442
3mqe416Prostaglandin G/H synthase 21.14.99.10.442
3o8tBMUMitogen-activated protein kinase 14/0.442
3qlzQLZUncharacterized protein/0.442
4cdmFADDeoxyribodipyrimidine photolyase/0.442
5c8yACPTubulin tyrosine ligase/0.442
1susSAHCaffeoyl-CoA O-methyltransferase2.1.1.1040.441
1u54ACPActivated CDC42 kinase 1/0.441
2y4gTIRTamL/0.441
2z3uCRRCytochrome P450/0.441
3i4bZ48Glycogen synthase kinase-3 beta2.7.11.260.441
3kpzZNEVitamin D3 receptor/0.441
3nxuRITCytochrome P450 3A4/0.441
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
4b7sQLECytochrome P450 monooxygenase PikC/0.441
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.441
4xli1N1Abelson tyrosine-protein kinase 22.7.10.20.441
1e6eFADNADPH:adrenodoxin oxidoreductase, mitochondrial1.18.1.60.440
1nzfUPGDNA beta-glucosyltransferase/0.440
1q99ANPSerine/threonine-protein kinase SKY12.7.11.10.440
1xddAAYIntegrin alpha-L/0.440
2b5vNAPGlucose 1-dehydrogenase/0.440
2xvdAS6Ephrin type-B receptor 42.7.10.10.440
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.440
3ezrEZRCyclin-dependent kinase 22.7.11.220.440
3sgv2BJDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.440
3ua506XCytochrome P450 2B61.14.130.440
4dlj6RGMitogen-activated protein kinase 14/0.440
4h3c0YZDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.440
4hnc0UTMandelate racemase/0.440
4i02CMPcAMP-activated global transcriptional regulator CRP/0.440
4ipw1G7Mycocyclosin synthase1.14.21.90.440