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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3r336MEDihydrofolate reductase1.5.1.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3r336MEDihydrofolate reductase1.5.1.31.000
4h9614QDihydrofolate reductase1.5.1.30.570
1klkPMDDihydrofolate reductase1.5.1.30.549
3qg2CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.548
1aoeGW3Dihydrofolate reductase1.5.1.30.544
1ia1TQ3Dihydrofolate reductase1.5.1.30.544
4m2xTMQDihydrofolate reductase1.5.1.30.543
4h9506UDihydrofolate reductase1.5.1.30.540
3qls55VDihydrofolate reductase1.5.1.30.537
1vj3TABDihydrofolate reductase1.5.1.30.534
3dauMTXDihydrofolate reductase1.5.1.30.534
3sai9DRDihydrofolate reductase/0.534
1rx3MTXDihydrofolate reductase1.5.1.30.530
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.530
1j3jCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.528
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.528
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.528
1m78CLZDihydrofolate reductase1.5.1.30.527
4ixeIXEDihydrofolate reductase1.5.1.30.524
1hfqMOTDihydrofolate reductase1.5.1.30.523
1m7aMQUDihydrofolate reductase1.5.1.30.522
3qyoQ24Dihydrofolate reductase1.5.1.30.520
3sa27DRDihydrofolate reductase/0.520
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.518
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.517
4p66MTXDihydrofolate reductase/0.517
1hfpMOTDihydrofolate reductase1.5.1.30.516
1e26GPBDihydrofolate reductase1.5.1.30.515
3qlzQLZUncharacterized protein/0.515
3qly55VUncharacterized protein/0.514
2blbCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.513
2w3vTOPDihydrofolate reductase/0.511
3irn1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.511
3ix9MTXDihydrofolate reductase1.5.1.30.511
3qlxQLRUncharacterized protein/0.510
2blaCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.509
2zzaFOLDihydrofolate reductase/0.509
2cd2FOLDihydrofolate reductase1.5.1.30.508
3eej53RUncharacterized protein/0.508
1dg5TOPDihydrofolate reductase1.5.1.30.505
3qlrQLRDihydrofolate reductase1.5.1.30.505
3td8D2RDihydrofolate reductase1.5.1.30.504
5cccDDFDihydrofolate reductase1.5.1.30.504
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.502
4nx6FOLDihydrofolate reductase1.5.1.30.502
3eel53TUncharacterized protein/0.501
1cd2FOLDihydrofolate reductase1.5.1.30.498
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.498
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.498
1rf7DHFDihydrofolate reductase1.5.1.30.496
1tdrMTXDihydrofolate reductase1.5.1.30.496
3tq9MTXDihydrofolate reductase/0.496
3um61CYBifunctional dihydrofolate reductase-thymidylate synthase/0.496
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.495
2fzhDH1Dihydrofolate reductase1.5.1.30.494
1re7FOLDihydrofolate reductase1.5.1.30.493
1qzfFOLBifunctional dihydrofolate reductase-thymidylate synthase/0.492
1ly3COGDihydrofolate reductase1.5.1.30.491
3ql3FOLDihydrofolate reductase1.5.1.30.491
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.490
4fhbFOLDihydrofolate reductase1.5.1.30.490
1ia2TQ4Dihydrofolate reductase1.5.1.30.489
3drcMTXDihydrofolate reductase1.5.1.30.489
4h9753SDihydrofolate reductase1.5.1.30.489
1dajMOTDihydrofolate reductase1.5.1.30.488
1nw3SAMHistone-lysine N-methyltransferase, H3 lysine-79 specific2.1.1.430.488
3cseN22Uncharacterized protein/0.488
3rg9WRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.488
4nx7FOLDihydrofolate reductase1.5.1.30.488
1m79MQ1Dihydrofolate reductase1.5.1.30.487
3a4pDFQHepatocyte growth factor receptor2.7.10.10.487
4h9814QUncharacterized protein/0.487
4ixfIXFDihydrofolate reductase1.5.1.30.487
1dg7WRBDihydrofolate reductase1.5.1.30.486
1s3yTQTDihydrofolate reductase1.5.1.30.486
2c3u2TPPyruvate synthase/0.486
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.486
1rx7FOLDihydrofolate reductase1.5.1.30.485
1v7aFRCAdenosine deaminase3.5.4.40.485
2x7hPFNProstaglandin reductase 310.485
3i8aN22Dihydrofolate reductase1.5.1.30.485
3invC50Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.485
1rx5DDFDihydrofolate reductase1.5.1.30.484
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.484
3tqbFOLDihydrofolate reductase/0.484
1ddrMTXDihydrofolate reductase1.5.1.30.483
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.483
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.482
3c1xCKKHepatocyte growth factor receptor2.7.10.10.482
3dg8RJ6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.482
4dp3MMVBifunctional dihydrofolate reductase-thymidylate synthase/0.482
3ntz3TZDihydrofolate reductase1.5.1.30.481
4ixgIXGDihydrofolate reductase1.5.1.30.481
4x5gFOLDihydrofolate reductase1.5.1.30.481
2w3wVG9Dihydrofolate reductase/0.479
2w6oOA3Biotin carboxylase6.3.4.140.479
1draMTXDihydrofolate reductase1.5.1.30.477
1ly4COQDihydrofolate reductase1.5.1.30.477
3ml8ML8Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.477
4j6bPLOCytochrome P450 monooxygenase/0.477
1dyrTOPDihydrofolate reductase1.5.1.30.475
3jwcEKBDihydrofolate reductase/0.475
4x5iFOLDihydrofolate reductase1.5.1.30.475
3njoPYVAbscisic acid receptor PYR1/0.474
4kfj1R0Dihydrofolate reductase1.5.1.30.474
1wxyFRKAdenosine deaminase3.5.4.40.473
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.473
4bfrJ82Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform2.7.1.1530.473
2chw039Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.472
4kd79DRDihydrofolate reductase1.5.1.30.472
4yswNAIXanthine dehydrogenase/oxidase/0.472
1yqj6NPMitogen-activated protein kinase 14/0.471
3cd2MTXDihydrofolate reductase1.5.1.30.471
4i1nFOLDihydrofolate reductase1.5.1.30.470
4mv1ADPBiotin carboxylase6.3.4.140.470
2z2w770Wee1-like protein kinase2.7.10.20.469
4u9zCOAAlpha-tubulin N-acetyltransferase 1/0.469
1bozPRDDihydrofolate reductase1.5.1.30.468
1lhwESMSex hormone-binding globulin/0.468
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.468
1nq7ARLNuclear receptor ROR-beta/0.468
4bgbADPPredicted molecular chaperone distantly related to HSP70-fold metalloproteases/0.467
1df7MTXDihydrofolate reductase1.5.1.30.466
2w71L23Biotin carboxylase6.3.4.140.466
3jwm5WBDihydrofolate reductase/0.466
4kxl6C62'-deoxynucleoside 5'-phosphate N-hydrolase 1/0.466
1ludTRRDihydrofolate reductase1.5.1.30.465
2drcMTXDihydrofolate reductase1.5.1.30.465
2hc4VDXVitamin D3 receptor A/0.465
3eek53SUncharacterized protein/0.465
3g8dADPBiotin carboxylase6.3.4.140.465
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.465
1rh3MTXDihydrofolate reductase1.5.1.30.464
4fjyFJYPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.464
5kf2ACOPredicted acetyltransferase/0.464
1rb2FOLDihydrofolate reductase1.5.1.30.463
3clbTMQBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.463
3sgy06WDihydrofolate reductase1.5.1.30.463
3v94WYQPhosphodiesterase/0.463
4b8uIBK3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase4.2.1.590.463
4fjz4FJPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.463
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.463
4l9q9TPSerum albumin/0.463
4zasTYDCalS13/0.463
5d7q4I5NAD-dependent protein deacetylase sirtuin-23.5.10.463
4g8zTOPDihydrofolate reductase1.5.1.30.462
4imuH4BNitric oxide synthase, brain1.14.13.390.462
4kjjFOLDihydrofolate reductase1.5.1.30.462
4ej1FOLDihydrofolate reductase1.5.1.30.461
4gg50J3Hepatocyte growth factor receptor2.7.10.10.461
3i587NA2,7-dihydroxy-5-methyl-1-naphthoate 7-O-methyltransferase/0.460
3wd9QPCcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.460
4fhk0U0Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.460
4l8u9AZSerum albumin/0.460
5kf9ACOPredicted acetyltransferase/0.460
1ia3TQ5Dihydrofolate reductase1.5.1.30.459
1psdNADD-3-phosphoglycerate dehydrogenase1.1.1.950.459
2pulACPMethylthioribose kinase2.7.1.1000.459
4n702HXSerine/threonine-protein kinase pim-12.7.11.10.459
5kghACOPredicted acetyltransferase/0.459
3cv9VDXVitamin D3 dihydroxylase/0.458
3d3eD3ECorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.458
3eem53VUncharacterized protein/0.458
3sh25DRDihydrofolate reductase1.5.1.30.458
1ewyFADFerredoxin--NADP reductase1.18.1.20.457
1xwsBI1Serine/threonine-protein kinase pim-12.7.11.10.457
2vn0TDZCytochrome P450 2C8/0.457
3cgyRDCVirulence sensor histidine kinase PhoQ2.7.13.30.457
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.457
4bqg50QHeat shock protein HSP 90-alpha/0.457
4iv21GREstrogen receptor/0.457
4xe606UDihydrofolate reductase1.5.1.30.457
1dyiFOLDihydrofolate reductase1.5.1.30.456
1nbmADPATP synthase subunit beta, mitochondrial3.6.3.140.456
2pdaTPPPyruvate synthase/0.456
2rhrEMOPutative ketoacyl reductase1.3.10.456
2wkmPFYHepatocyte growth factor receptor2.7.10.10.456
3a1l2CCCytochrome P450/0.456
4ap7F47Hepatocyte growth factor receptor2.7.10.10.456
4cd2FOLDihydrofolate reductase1.5.1.30.456
4j4vSVRNucleocapsid protein/0.456
1drbMTXDihydrofolate reductase1.5.1.30.455
1dtnAPGMandelate racemase/0.455
1s3wTQTDihydrofolate reductase1.5.1.30.455
3sa16DRDihydrofolate reductase/0.455
1og5SWFCytochrome P450 2C9/0.454
2a4nCOAAac(6')-Ii protein/0.454
2o65MYFSerine/threonine-protein kinase pim-12.7.11.10.454
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.454
3qdd94MHeat shock protein HSP 90-alpha/0.454
1n4hREANuclear receptor ROR-beta/0.453
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.453
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.453
4ele31IDihydrofolate reductase/0.453
4hw319GInduced myeloid leukemia cell differentiation protein Mcl-1/0.453
4lm5Q17Serine/threonine-protein kinase pim-12.7.11.10.453
4lmuQUESerine/threonine-protein kinase pim-12.7.11.10.453
2olcADPMethylthioribose kinase2.7.1.1000.452
2punACPMethylthioribose kinase2.7.1.1000.452
3k47D09Dihydrofolate reductase1.5.1.30.452
4p68MTXDihydrofolate reductase/0.452
4x5jFOLDihydrofolate reductase1.5.1.30.452
1e90MYCPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.451
1n71COAAac(6')-Ii protein/0.451
1sezOMNProtoporphyrinogen oxidase, mitochondrial1.3.3.40.451
3nxvD2FDihydrofolate reductase1.5.1.30.451
4bubADPUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase/0.451
4kak06UDihydrofolate reductase1.5.1.30.451
4mv3ACPBiotin carboxylase6.3.4.140.451
4mv4ACPBiotin carboxylase6.3.4.140.451
1dyjDDFDihydrofolate reductase1.5.1.30.450
1kmsLIHDihydrofolate reductase1.5.1.30.450
1z0zNADNAD kinase/0.450
2fzjDH3Dihydrofolate reductase1.5.1.30.450
2j9gANPBiotin carboxylase6.3.4.140.450
2puiADPMethylthioribose kinase2.7.1.1000.450
2q3eUPGUDP-glucose 6-dehydrogenase1.1.1.220.450
3ue4DB8Tyrosine-protein kinase ABL12.7.10.20.450
3vtcTK3Vitamin D3 receptor/0.450
3w0hW12Vitamin D3 receptor/0.450
4at2ASDPossible succinate dehydrogenase/0.450
4bwaN0BPyrrolysine--tRNA ligase/0.450
4ixd1HVIntegrin alpha-L/0.450
4kbn25UDihydrofolate reductase1.5.1.30.450
4m6l21VDihydrofolate reductase1.5.1.30.450
1lwxAZDNucleoside diphosphate kinase, cytosolic2.7.4.60.449
2ay3MPPAromatic-amino-acid aminotransferase2.6.1.570.449
2zlcVDXVitamin D3 receptor/0.449
3cr7PPSAdenylyl-sulfate kinase2.7.1.250.449
3sr5Q12Dihydrofolate reductase1.5.1.30.449
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.449
5hi6MTXDihydrofolate reductase/0.449
1nzfUPGDNA beta-glucosyltransferase/0.448
1rd7FOLDihydrofolate reductase1.5.1.30.448
1taeNADDNA ligase/0.448
1tezHDFDeoxyribodipyrimidine photo-lyase4.1.99.30.448
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
2cdaNAPGlucose 1-dehydrogenase/0.448
3jpv1DRSerine/threonine-protein kinase pim-12.7.11.10.448
3uixQ17Serine/threonine-protein kinase pim-12.7.11.10.448
4g1z0VPVitamin D3 receptor A/0.448
2uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.447
3dfrMTXDihydrofolate reductase1.5.1.30.447
3nxrD2DDihydrofolate reductase1.5.1.30.447
3qarQARPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.447
4g34924Eukaryotic translation initiation factor 2-alpha kinase 32.7.11.10.447
4rd2GNPTranslation initiation factor 2 subunit gamma/0.447
1s19MC9Vitamin D3 receptor/0.446
1s64778Geranylgeranyl transferase type-1 subunit beta2.5.1.590.446
2bswCAOProbable acetyltransferase/0.446
3qm4PN0Cytochrome P450 2D6/0.446
3s79ASDAromatase1.14.14.140.446
3tdaPN0Cytochrome P450 2D6/0.446
4m7vRARDihydrofolate reductase/0.446
1o5rFR9Adenosine deaminase3.5.4.40.445
1t47NTD4-hydroxyphenylpyruvate dioxygenase1.13.11.270.445
1wpgADPSarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.445
1yi4ADNSerine/threonine-protein kinase pim-12.7.11.10.445
2o4rVD5Vitamin D3 receptor/0.445
2w3mFOLDihydrofolate reductase1.5.1.30.445
3h1vTK1Glucokinase2.7.1.20.445
4ag7COAGlucosamine 6-phosphate N-acetyltransferase/0.445
4iyg1HUStrictosidine synthase4.3.3.20.445
4kebFOLDihydrofolate reductase1.5.1.30.445
4uogYYYNucleoside diphosphate kinase/0.445
1kl2FONSerine hydroxymethyltransferase/0.444
1q3gUDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.444
2atiIHUGlycogen phosphorylase, liver form2.4.1.10.444
2pupADPMethylthioribose kinase2.7.1.1000.444
2q7gCCLPyrrolysine--tRNA ligase/0.444
3fgoCZASarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.444
3ldfSAHUncharacterized protein/0.444
3qaqQAQPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
3tmz06XCytochrome P450 2B41.14.14.10.444
4c3yANB3-ketosteroid dehydrogenase/0.444
4cryACOPanD regulatory factor/0.444
4gg70J8Hepatocyte growth factor receptor2.7.10.10.444
4j6cSTRCytochrome P450 monooxygenase/0.444
7dfrFOLDihydrofolate reductase1.5.1.30.444
1e7vLY2Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
1rx8FOLDihydrofolate reductase1.5.1.30.443
2c3oTPPPyruvate synthase/0.443
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.443
2jj2ANPATP synthase subunit beta, mitochondrial3.6.3.140.443
4dfrMTXDihydrofolate reductase1.5.1.30.443
4eftEFTHeat shock protein HSP 90-alpha/0.443
4ffrATPUncharacterized protein/0.443
4hkfACOAlpha-tubulin N-acetyltransferase 1/0.443
4ma628EAra h 8 allergen/0.443
5kgjACOPredicted acetyltransferase/0.443
1bwkFMNNADPH dehydrogenase 11.6.99.10.442
1v79FR7Adenosine deaminase3.5.4.40.442
2cl5BIECatechol O-methyltransferase2.1.1.60.442
2jc6QPPCalcium/calmodulin-dependent protein kinase type 1D2.7.11.170.442
3k3kA8SAbscisic acid receptor PYR1/0.442
3r02UNMSerine/threonine-protein kinase pim-12.7.11.10.442
5kgpACOPredicted acetyltransferase/0.442
1dreMTXDihydrofolate reductase1.5.1.30.441
1u1f183Uridine phosphorylase2.4.2.30.441
1xpcAITEstrogen receptor/0.441
2w6zL21Biotin carboxylase6.3.4.140.441
2xaeADPKinesin-like protein KIF11/0.441
2xtbKRMAdenosine kinase, putative/0.441
3eigMTXDihydrofolate reductase1.5.1.30.441
3lfcZ86Mitogen-activated protein kinase 14/0.441
3srsM23Dihydrofolate reductase1.5.1.30.441
3zc3NAPFerredoxin--NADP reductase1.18.1.20.441
1bwlFMNNADPH dehydrogenase 11.6.99.10.440
1ie9VDXVitamin D3 receptor/0.440
2pmdGNPTranslation initiation factor 2 subunit gamma/0.440
2uzaHTLPyruvate synthase/0.440
3nxyD2HDihydrofolate reductase1.5.1.30.440
3tq8TOPDihydrofolate reductase/0.440
3zp4TSAChorismate mutase AroH5.4.99.50.440
4a7cE46Serine/threonine-protein kinase pim-12.7.11.10.440
4dm8REARetinoic acid receptor beta/0.440
4ia7BIVVitamin D3 receptor A/0.440
5kf8ACOPredicted acetyltransferase/0.440