1.900 Å
X-ray
2008-12-19
Name: | Biotin carboxylase |
---|---|
ID: | ACCC_ECOLI |
AC: | P24182 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 6.3.4.14 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 23.064 |
---|---|
Number of residues: | 20 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.577 | 735.750 |
% Hydrophobic | % Polar |
---|---|
42.66 | 57.34 |
According to VolSite |
HET Code: | L21 |
---|---|
Formula: | C10H13N5 |
Molecular weight: | 203.244 g/mol |
DrugBank ID: | DB08074 |
Buried Surface Area: | 61.5 % |
Polar Surface area: | 69.62 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
2.68153 | -23.8659 | 23.9925 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C14 | CD1 | ILE- 157 | 4.26 | 0 | Hydrophobic |
N9 | NZ | LYS- 159 | 2.75 | 164.23 | H-Bond (Protein Donor) |
N10 | OE2 | GLU- 201 | 3.13 | 167.78 | H-Bond (Ligand Donor) |
N10 | O | LYS- 202 | 2.88 | 158.68 | H-Bond (Ligand Donor) |
C12 | CE1 | TYR- 203 | 4.21 | 0 | Hydrophobic |
N1 | N | LEU- 204 | 3.13 | 164.68 | H-Bond (Protein Donor) |
C12 | CD1 | ILE- 437 | 4.27 | 0 | Hydrophobic |