2.470 Å
X-ray
2015-04-14
Name: | CalS13 |
---|---|
ID: | Q8KND8_MICEC |
AC: | Q8KND8 |
Organism: | Micromonospora echinospora |
Reign: | Bacteria |
TaxID: | 1877 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 50 % |
F | 50 % |
B-Factor: | 67.629 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.986 | 1042.875 |
% Hydrophobic | % Polar |
---|---|
52.10 | 47.90 |
According to VolSite |
HET Code: | TYD |
---|---|
Formula: | C10H13N2O11P2 |
Molecular weight: | 399.165 g/mol |
DrugBank ID: | DB03103 |
Buried Surface Area: | 47.23 % |
Polar Surface area: | 220.27 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 2 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
14.6832 | 49.29 | 29.4871 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C4' | CB | SER- 13 | 4.39 | 0 | Hydrophobic |
N3 | O | GLY- 32 | 2.64 | 150.11 | H-Bond (Ligand Donor) |
O4 | N | LEU- 34 | 2.7 | 150.75 | H-Bond (Protein Donor) |
O4 | N | GLU- 35 | 3.19 | 170.44 | H-Bond (Protein Donor) |
C5M | CB | GLU- 35 | 4.12 | 0 | Hydrophobic |
C5M | CB | ALA- 200 | 4.22 | 0 | Hydrophobic |
C1' | CG2 | ILE- 201 | 4.27 | 0 | Hydrophobic |
C5' | CD1 | ILE- 201 | 3.9 | 0 | Hydrophobic |
O1A | CZ | ARG- 237 | 3.92 | 0 | Ionic (Protein Cationic) |
O1A | NH1 | ARG- 237 | 2.85 | 128.66 | H-Bond (Protein Donor) |