1.990 Å
X-ray
2008-12-19
Name: | Biotin carboxylase |
---|---|
ID: | ACCC_ECOLI |
AC: | P24182 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 6.3.4.14 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 29.148 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.900 | 675.000 |
% Hydrophobic | % Polar |
---|---|
42.50 | 57.50 |
According to VolSite |
HET Code: | L23 |
---|---|
Formula: | C15H14Cl2N5 |
Molecular weight: | 335.211 g/mol |
DrugBank ID: | DB08076 |
Buried Surface Area: | 67.77 % |
Polar Surface area: | 70.87 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
35.8461 | 23.043 | 23.2845 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N4 | NZ | LYS- 159 | 2.85 | 157.67 | H-Bond (Protein Donor) |
DuAr | NZ | LYS- 159 | 3.96 | 101.59 | Pi/Cation |
C12 | CE | MET- 169 | 4.15 | 0 | Hydrophobic |
N14 | OE2 | GLU- 201 | 3.09 | 177.15 | H-Bond (Ligand Donor) |
N14 | O | LYS- 202 | 2.78 | 163.12 | H-Bond (Ligand Donor) |
N13 | N | LEU- 204 | 2.94 | 169.29 | H-Bond (Protein Donor) |
C20 | CB | HIS- 209 | 4.21 | 0 | Hydrophobic |
C22 | CG | GLN- 233 | 3.8 | 0 | Hydrophobic |
CL21 | CD2 | LEU- 278 | 4.44 | 0 | Hydrophobic |
C6 | CD1 | LEU- 278 | 3.72 | 0 | Hydrophobic |
CL21 | CD1 | ILE- 287 | 3.6 | 0 | Hydrophobic |
C12 | CD1 | ILE- 287 | 3.92 | 0 | Hydrophobic |
C20 | CG2 | ILE- 437 | 3.91 | 0 | Hydrophobic |
C22 | CB | ILE- 437 | 3.57 | 0 | Hydrophobic |
C18 | CD1 | ILE- 437 | 3.73 | 0 | Hydrophobic |