2.650 Å
X-ray
2007-04-21
| Name: | Translation initiation factor 2 subunit gamma |
|---|---|
| ID: | IF2G_SULSO |
| AC: | Q980A5 |
| Organism: | Sulfolobus solfataricus |
| Reign: | Archaea |
| TaxID: | 273057 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 72.305 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 2 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.043 | 695.250 |
| % Hydrophobic | % Polar |
|---|---|
| 54.37 | 45.63 |
| According to VolSite | |

| HET Code: | GNP |
|---|---|
| Formula: | C10H13N6O13P3 |
| Molecular weight: | 518.164 g/mol |
| DrugBank ID: | DB02082 |
| Buried Surface Area: | 52.38 % |
| Polar Surface area: | 338.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 24.1833 | 4.99434 | -3.45616 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C5' | SD | MET- 45 | 4.3 | 0 | Hydrophobic |
| O1G | NZ | LYS- 225 | 3.58 | 0 | Ionic (Protein Cationic) |
| O1B | NZ | LYS- 225 | 2.86 | 0 | Ionic (Protein Cationic) |
| O1B | NZ | LYS- 225 | 2.86 | 152.31 | H-Bond (Protein Donor) |
| N2 | OG | SER- 278 | 3.25 | 120.68 | H-Bond (Ligand Donor) |
| N2 | O | SER- 278 | 3.32 | 144.05 | H-Bond (Ligand Donor) |
| O2' | NH2 | ARG- 280 | 2.68 | 133.4 | H-Bond (Protein Donor) |
| N3 | NE | ARG- 280 | 3.41 | 125.82 | H-Bond (Protein Donor) |
| N2 | O | ALA- 296 | 2.51 | 141.05 | H-Bond (Ligand Donor) |
| C1' | CB | ALA- 296 | 4.31 | 0 | Hydrophobic |
| O2G | O | HOH- 421 | 2.63 | 179.99 | H-Bond (Protein Donor) |