2.650 Å
X-ray
2007-04-21
Name: | Translation initiation factor 2 subunit gamma |
---|---|
ID: | IF2G_SULSO |
AC: | Q980A5 |
Organism: | Sulfolobus solfataricus |
Reign: | Archaea |
TaxID: | 273057 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 72.305 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.043 | 695.250 |
% Hydrophobic | % Polar |
---|---|
54.37 | 45.63 |
According to VolSite |
HET Code: | GNP |
---|---|
Formula: | C10H13N6O13P3 |
Molecular weight: | 518.164 g/mol |
DrugBank ID: | DB02082 |
Buried Surface Area: | 52.38 % |
Polar Surface area: | 338.36 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 5 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
24.1833 | 4.99434 | -3.45616 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5' | SD | MET- 45 | 4.3 | 0 | Hydrophobic |
O1G | NZ | LYS- 225 | 3.58 | 0 | Ionic (Protein Cationic) |
O1B | NZ | LYS- 225 | 2.86 | 0 | Ionic (Protein Cationic) |
O1B | NZ | LYS- 225 | 2.86 | 152.31 | H-Bond (Protein Donor) |
N2 | OG | SER- 278 | 3.25 | 120.68 | H-Bond (Ligand Donor) |
N2 | O | SER- 278 | 3.32 | 144.05 | H-Bond (Ligand Donor) |
O2' | NH2 | ARG- 280 | 2.68 | 133.4 | H-Bond (Protein Donor) |
N3 | NE | ARG- 280 | 3.41 | 125.82 | H-Bond (Protein Donor) |
N2 | O | ALA- 296 | 2.51 | 141.05 | H-Bond (Ligand Donor) |
C1' | CB | ALA- 296 | 4.31 | 0 | Hydrophobic |
O2G | O | HOH- 421 | 2.63 | 179.99 | H-Bond (Protein Donor) |