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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2wugHPK4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase3.7.1.17

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
2wugHPK4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase3.7.1.171.000
2wufKEM4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase3.7.1.170.666
2wueKEK4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase3.7.1.170.640
3vt7VDXVitamin D3 receptor/0.501
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.496
3r04UNQSerine/threonine-protein kinase pim-12.7.11.10.491
4g1z0VPVitamin D3 receptor A/0.491
3vt65YIVitamin D3 receptor/0.488
1s19MC9Vitamin D3 receptor/0.487
3vtbTKAVitamin D3 receptor/0.487
2jn3JN3Fatty acid-binding protein, liver/0.486
3tz3B36Acetyl-CoA carboxylase/0.486
3bac3B9DNA ligase/0.485
3vtdTKDVitamin D3 receptor/0.484
3vtcTK3Vitamin D3 receptor/0.482
3a783EVVitamin D3 receptor/0.481
1txiTX5Vitamin D3 receptor/0.480
1osvCHCBile acid receptor/0.479
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.478
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.475
3tvuB37Acetyl-CoA carboxylase/0.475
3vt5YI2Vitamin D3 receptor/0.475
1g4sTPSThiamine-phosphate synthase/0.474
1jipKTN6-deoxyerythronolide B hydroxylase/0.474
2hbhXE4Vitamin D3 receptor A/0.473
2nq8ZIDEnoyl-ACP reductase/0.473
2zbaZBATrichothecene 3-O-acetyltransferase/0.473
4cax646Glycylpeptide N-tetradecanoyltransferase2.3.1.970.473
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.472
2ev9NAPShikimate dehydrogenase (NADP(+))/0.471
3w0gW07Vitamin D3 receptor/0.471
4g1d0VKVitamin D3 receptor A/0.471
1ot7IU5Bile acid receptor/0.470
3w0hW12Vitamin D3 receptor/0.470
1ppjANYCytochrome b/0.469
1xu9CPSCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.469
2harOCCVitamin D3 receptor/0.469
4nxuADPMitochondrial dynamics protein MID51/0.469
2hcdBIVVitamin D3 receptor A/0.468
2zlcVDXVitamin D3 receptor/0.468
3fcoIIGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.468
3vt9YI4Vitamin D3 receptor/0.468
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.468
1v35NAIEnoyl-ACP reductase/0.467
3iaeD7KBenzaldehyde lyase/0.467
3p3zP3ZPutative cytochrome P450/0.466
3vrtYS2Vitamin D3 receptor/0.466
4lxhC1EAlpha/beta hydrolase fold/0.466
4z24FADPutative GMC-type oxidoreductase R13510.466
4e5yNDPGDP-L-fucose synthase1.1.1.2710.465
5iqiGNPBifunctional AAC/APH2.3.10.465
5k2cZMAAdenosine receptor A2a/0.465
1ot7CHCBile acid receptor/0.464
4rupH97Vitamin D3 receptor A/0.464
1ie9VDXVitamin D3 receptor/0.463
1jioDEB6-deoxyerythronolide B hydroxylase/0.463
3ml8ML8Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.463
4bzo676Serine/threonine-protein kinase pim-12.7.11.10.463
1fmlRTLRetinol dehydratase/0.462
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.462
2hb8MVDVitamin D3 receptor/0.462
3byzH11Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.462
4j6dTESCytochrome P450 monooxygenase/0.462
4rujVDXVitamin D3 receptor A/0.462
1cf3FADGlucose oxidase1.1.3.40.461
1xalNAD3-dehydroquinate synthase/0.461
3u8hBHPPhospholipase A2, membrane associated/0.461
3vt8YI3Vitamin D3 receptor/0.461
4i6gFADCryptochrome-2/0.461
4ixfIXFDihydrofolate reductase1.5.1.30.461
1ie8KH1Vitamin D3 receptor/0.460
1rk3VDXVitamin D3 receptor/0.460
2v1aFMNNPH1-1/0.460
3cxw7CPSerine/threonine-protein kinase pim-12.7.11.10.460
3qk0QK0Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.460
4g2h0VQVitamin D3 receptor A/0.460
4itfTFYVitamin D3 receptor/0.460
4j6bPLOCytochrome P450 monooxygenase/0.460
4jv618FRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.460
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.460
5jscFADPutative acyl-CoA dehydrogenase/0.460
3d3eD3ECorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.459
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.459
3vrwYS5Vitamin D3 receptor/0.459
3w5p4OAVitamin D3 receptor/0.459
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.458
3qaqQAQPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.458
3qlrNDPDihydrofolate reductase1.5.1.30.458
1db1VDXVitamin D3 receptor/0.457
1qaxHMG3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.457
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.457
3w5rLOAVitamin D3 receptor/0.457
4oxyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.457
1iyzNDPProbable quinone oxidoreductase/0.456
1xddAAYIntegrin alpha-L/0.456
2o4rVD5Vitamin D3 receptor/0.456
3kpzZNEVitamin D3 receptor/0.456
4enhFVXCholesterol 24-hydroxylase/0.456
4ia2BIVVitamin D3 receptor A/0.456
4iteTEYVitamin D3 receptor/0.456
4ly91YYGlucokinase regulatory protein/0.456
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.456
4rlh0WEEnoyl-[acyl-carrier-protein] reductase [NADH]/0.456
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.455
2hc4VDXVitamin D3 receptor A/0.455
2zl9VDAVitamin D3 receptor/0.455
3qwbNDPProbable quinone oxidoreductase1.6.5.50.455
3vt45YIVitamin D3 receptor/0.455
4orkGDPBifunctional AAC/APH2.3.10.455
4q71FADBifunctional protein PutA/0.455
1bygSTUTyrosine-protein kinase CSK/0.454
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
2qo9ANPEphrin type-A receptor 32.7.10.10.454
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.454
2zlaVDBVitamin D3 receptor/0.454
3w0iO11Vitamin D3 receptor/0.454
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.454
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.454
4z63ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.454
1fmjRTLRetinol dehydratase/0.453
1vrwNAIEnoyl-ACP reductase/0.453
3l08ZIGPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.453
3r5yF42Uncharacterized protein/0.453
3w0jT08Vitamin D3 receptor/0.453
4ia3BIVVitamin D3 receptor A/0.453
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.452
1nytNAPShikimate dehydrogenase (NADP(+))/0.452
1x8lOXRRetinol dehydratase/0.452
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.452
3t2yFADSulfide-quinone reductase/0.452
3up3XCAaceDAF-12/0.452
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
4o701QKBromodomain-containing protein 4/0.452
1galFADGlucose oxidase1.1.3.40.451
2aibERGBeta-elicitin cinnamomin/0.451
2j2iLY4Serine/threonine-protein kinase pim-12.7.11.10.451
2vtdLKMUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.451
3gmd2M3Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.451
3h1jSMACytochrome b/0.451
3r6sCMPCRP-like cAMP-activated global transcriptional regulator/0.451
3t2zFADSulfide-quinone reductase/0.451
3vruYS3Vitamin D3 receptor/0.451
3zbnCOA3-ketoacyl-CoA thiolase-like protein/0.451
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.451
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.450
3bxxQUEDihydroflavonol 4-reductase1.1.1.2190.450
3pm9FADPutative oxidoreductase/0.450
4at0FADPossible succinate dehydrogenase/0.450
4fhi0S4Vitamin D3 receptor A/0.450
4gi2NAPCrotonyl-CoA carboxylase/reductase/0.450
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.450
1nvtNAPShikimate dehydrogenase (NADP(+))/0.449
2po7CHDFerrochelatase, mitochondrial4.99.1.10.449
2q66ATPPoly(A) polymerase2.7.7.190.449
2vcmM11Isopenicillin N synthase1.21.3.10.449
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.449
2x86ADPADP-L-glycero-D-manno-heptose-6-epimerase/0.449
3mg3ECHOrange carotenoid-binding protein/0.449
4ez8DHFThymidylate synthase2.1.1.450.449
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
2bdf24AProto-oncogene tyrosine-protein kinase Src2.7.10.20.448
2bikBI1Serine/threonine-protein kinase pim-12.7.11.10.448
2dr3ADPUPF0273 protein PH0284/0.448
2q4wFADCytokinin dehydrogenase 71.5.99.120.448
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.448
3oibFDAPutative acyl-CoA dehydrogenase/0.448
3r5zF42Uncharacterized protein/0.448
4bb3KKAIsopenicillin N synthase1.21.3.10.448
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.447
1jutLYDThymidylate synthase/0.447
1rx5DDFDihydrofolate reductase1.5.1.30.447
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.447
2hamC33Vitamin D3 receptor/0.447
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.447
3cukFADD-amino-acid oxidase1.4.3.30.447
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.447
3tdaPN0Cytochrome P450 2D6/0.447
4g3jVNTLanosterol 14-alpha-demethylase/0.447
3reyXACAdenosine receptor A2a/0.447
2ebaFADPutative glutaryl-CoA dehydrogenase/0.446
2h2qNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.446
2hasC3OVitamin D3 receptor/0.446
4at3LTIBDNF/NT-3 growth factors receptor2.7.10.10.446
4hfr14MCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
4ure1PSCyclohexanol dehydrogenase/0.446
1gqtACPRibokinase/0.445
1qvnFRIInterleukin-2/0.445
2puiADPMethylthioribose kinase2.7.1.1000.445
3apfBMWPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
3drcMTXDihydrofolate reductase1.5.1.30.445
4bznUGXSerine/threonine-protein kinase pim-12.7.11.10.445
4fehFADDecaprenylphosphoryl-beta-D-ribose oxidase/0.445
4klnAGSTransitional endoplasmic reticulum ATPase3.6.4.60.445
4q72FADBifunctional protein PutA/0.445
5k2aZMAAdenosine receptor A2a/0.445
5jtbZMAAdenosine receptor A2a/0.445
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
2givACOHistone acetyltransferase KAT8/0.444
2nn7M29Carbonic anhydrase 14.2.1.10.444
2wpxACOOrf14/0.444
3gw9VNILanosterol 14-alpha-demethylase/0.444
3p8iFMNPentaerythritol tetranitrate reductase/0.444
3uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.444
3uozNAP2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.444
4dk50KOPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.444
4icyFADPgaE/0.444
5bylGCPBifunctional AAC/APH2.3.10.444
1synF89Thymidylate synthase/0.443
1szmBI4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
2fr0NDP6-deoxyerythronolide-B synthase EryA1, modules 1 and 2/0.443
3frdDHFDihydrofolate reductase1.5.1.30.443
3r7kFDAProbable acyl CoA dehydrogenase/0.443
3rukAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.443
3sz0FADSulfide-quinone reductase/0.443
3vrvYSDVitamin D3 receptor/0.443
3w0c6DSVitamin D3 receptor/0.443
3zdnFADMonoamine oxidase N1.4.3.40.443
4g20484Vitamin D3 receptor A/0.443
4nky3QZSteroid 17-alpha-hydroxylase/17,20 lyase/0.443
1fp1HCCIsoliquiritigenin 2'-O-methyltransferase/0.442
1gjrNAPFerredoxin--NADP reductase1.18.1.20.442
1rjkVDZVitamin D3 receptor/0.442
3bgxMEFThymidylate synthase/0.442
3th8TH9Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.442
3tnlNADShikimate dehydrogenase (NADP(+))/0.442
4c3xFAD3-ketosteroid dehydrogenase/0.442
4e37NDPCatalase1.11.1.60.442
4fhh0U3Vitamin D3 receptor A/0.442
4ubsDIFPentalenic acid synthase1.14.15.110.442
4wq4ATPtRNA N6-adenosine threonylcarbamoyltransferase/0.442
1dtpAPUDiphtheria toxin/0.441
1dxoFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.441
1hb1OCVIsopenicillin N synthase1.21.3.10.441
1hncGDNGlutathione S-transferase Mu 22.5.1.180.441
1rkhVD2Vitamin D3 receptor/0.441
1tl7FOKAdenylate cyclase type 2/0.441
1tl7FOKAdenylate cyclase type 5/0.441
1wlvCOAPhenylacetic acid degradation protein PaaI/0.441
2gtk208Peroxisome proliferator-activated receptor gamma/0.441
2vww7X2Ephrin type-B receptor 42.7.10.10.441
2z1qFADAcyl-CoA dehydrogenase/0.441
3fsuC2F5,10-methylenetetrahydrofolate reductase1.5.1.200.441
3gwfFADCyclohexanone monooxygenase/0.441
3ii43IIDihydrolipoyl dehydrogenase1.8.1.40.441
3iupNDPPossible NADH oxidoreductase/0.441
3lqfNADGalactitol dehydrogenase/0.441
3p99LNPLanosterol 14-alpha-demethylase/0.441
3w5tLHPVitamin D3 receptor/0.441
4g1y0VOVitamin D3 receptor A/0.441
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.441
4irnFADAnaB/0.441
4o7uTHFThymidylate synthase/0.441
1n4hREANuclear receptor ROR-beta/0.440
1nzyBCA4-chlorobenzoyl coenzyme A dehalogenase3.8.1.70.440
1s0zEB1Vitamin D3 receptor/0.440
2hb7O1CVitamin D3 receptor/0.440
2ic5GDPRas-related C3 botulinum toxin substrate 3/0.440
2ittAEEEpidermal growth factor receptor2.7.10.10.440
2w4qCBWProstaglandin reductase 21.3.1.480.440
3g5sFADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO/0.440
3ml9ML9Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.440
3znpFADD-amino-acid oxidase1.4.3.30.440
4eutBX7Serine/threonine-protein kinase TBK12.7.11.10.440
4jbtASDCytochrome P450 monooxygenase/0.440
4nxvGDPMitochondrial dynamics protein MID51/0.440
4qmySTUSerine/threonine-protein kinase 242.7.11.10.440
4wq5ATPtRNA N6-adenosine threonylcarbamoyltransferase/0.440