2.330 Å
X-ray
2014-10-21
Name: | tRNA N6-adenosine threonylcarbamoyltransferase |
---|---|
ID: | TSAD_ECOLI |
AC: | P05852 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 45.147 |
---|---|
Number of residues: | 44 |
Including | |
Standard Amino Acids: | 42 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MG FE |
Ligandability | Volume (Å3) |
---|---|
0.725 | 853.875 |
% Hydrophobic | % Polar |
---|---|
46.64 | 53.36 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 70.12 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-23.225 | -46.6778 | 47.0453 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3G | OG | SER- 136 | 2.57 | 157.12 | H-Bond (Protein Donor) |
O3A | N | GLY- 137 | 3.21 | 147.81 | H-Bond (Protein Donor) |
O3' | OD2 | ASP- 167 | 2.74 | 168.5 | H-Bond (Ligand Donor) |
O2' | OD1 | ASP- 167 | 2.74 | 151.03 | H-Bond (Ligand Donor) |
O2A | N | GLY- 268 | 2.9 | 139.31 | H-Bond (Protein Donor) |
C1' | CG2 | VAL- 269 | 3.96 | 0 | Hydrophobic |
N1 | ND2 | ASN- 272 | 2.98 | 166.96 | H-Bond (Protein Donor) |
C5' | CG2 | THR- 299 | 4.38 | 0 | Hydrophobic |
O1A | N | ASP- 300 | 2.99 | 163.66 | H-Bond (Protein Donor) |
O1B | MG | MG- 401 | 2.66 | 0 | Metal Acceptor |
O1B | FE | FE- 402 | 2.38 | 0 | Metal Acceptor |
O3B | FE | FE- 402 | 2.16 | 0 | Metal Acceptor |