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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1votHUPAcetylcholinesterase3.1.1.7

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1votHUPAcetylcholinesterase3.1.1.71.000
1gpnHUBAcetylcholinesterase3.1.1.70.794
2cekN8TAcetylcholinesterase3.1.1.70.763
1qtiGNTAcetylcholinesterase3.1.1.70.713
2w6cBM4Acetylcholinesterase3.1.1.70.672
1w4lGL8Acetylcholinesterase3.1.1.70.654
1zgbA1EAcetylcholinesterase3.1.1.70.638
3zv7NHGAcetylcholinesterase3.1.1.70.636
1odcA8BAcetylcholinesterase3.1.1.70.625
1w6rGNTAcetylcholinesterase3.1.1.70.621
1e66HUXAcetylcholinesterase3.1.1.70.620
1h22E10Acetylcholinesterase3.1.1.70.617
2ckmAA7Acetylcholinesterase3.1.1.70.604
2xufTZ4Acetylcholinesterase3.1.1.70.602
1w76GNTAcetylcholinesterase3.1.1.70.601
1ut6A8NAcetylcholinesterase3.1.1.70.596
4b7zQ4QAcetylcholinesterase3.1.1.70.591
4ey6GNTAcetylcholinesterase3.1.1.70.590
2xuoTZ4Acetylcholinesterase3.1.1.70.589
2whqHI6Acetylcholinesterase3.1.1.70.586
2cmfF11Acetylcholinesterase3.1.1.70.576
2xuqTZ4Acetylcholinesterase3.1.1.70.575
2ha6SCKAcetylcholinesterase3.1.1.70.571
1u65CP0Acetylcholinesterase3.1.1.70.569
2gyuHI6Acetylcholinesterase3.1.1.70.569
4arbC57Acetylcholinesterase3.1.1.70.568
2jf0HBPAcetylcholinesterase3.1.1.70.566
1dx6GNTAcetylcholinesterase3.1.1.70.560
1eveE20Acetylcholinesterase3.1.1.70.560
4araC56Acetylcholinesterase3.1.1.70.558
4m0f1YKAcetylcholinesterase3.1.1.70.555
2xuhTZ4Acetylcholinesterase3.1.1.70.554
2xujTZ5Acetylcholinesterase3.1.1.70.553
1zgcA2EAcetylcholinesterase3.1.1.70.552
4ey7E20Acetylcholinesterase3.1.1.70.552
1q84TZ4Acetylcholinesterase3.1.1.70.550
2xukTZ5Acetylcholinesterase3.1.1.70.550
2j3qTFLAcetylcholinesterase3.1.1.70.549
4a16H34Acetylcholinesterase3.1.1.70.547
2xupTZ5Acetylcholinesterase3.1.1.70.545
2xuiTZ5Acetylcholinesterase3.1.1.70.544
1p0pBCHCholinesterase3.1.1.80.523
3jsxCC2NAD(P)H dehydrogenase [quinone] 11.6.5.20.514
2gywOBIAcetylcholinesterase3.1.1.70.512
3r8hZOMAldo-keto reductase family 1 member C3/0.495
1ry0PG2Aldo-keto reductase family 1 member C3/0.492
1jqdSAHHistamine N-methyltransferase2.1.1.80.491
3g1rFIT3-oxo-5-beta-steroid 4-dehydrogenase/0.488
3gncQQQGlutaryl-CoA dehydrogenase/0.484
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.482
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.482
2g1n1IGRenin3.4.23.150.479
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.478
3cavCI23-oxo-5-beta-steroid 4-dehydrogenase/0.477
1oj4CDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase2.7.1.1480.476
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.476
3cotSTR3-oxo-5-beta-steroid 4-dehydrogenase/0.476
2a0xDIHPurine nucleoside phosphorylase2.4.2.10.474
5irnADPNucleotide binding oligomerization domain containing 2/0.474
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.473
3uzzASD3-oxo-5-beta-steroid 4-dehydrogenase/0.473
4dbw511Aldo-keto reductase family 1 member C3/0.473
1ry8RUTAldo-keto reductase family 1 member C3/0.472
3hiiPNTAmiloride-sensitive amine oxidase [copper-containing]/0.472
4e0u0MVCyclic dipeptide N-prenyltransferase/0.472
2il2LIXRenin3.4.23.150.471
4bb3KKAIsopenicillin N synthase1.21.3.10.470
1h60STRPentaerythritol tetranitrate reductase/0.469
1h69ARHNAD(P)H dehydrogenase [quinone] 11.6.5.20.469
1q83TZ5Acetylcholinesterase3.1.1.70.468
1fapRAPPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.467
1fapRAPSerine/threonine-protein kinase mTOR2.7.11.10.467
1hb3SCVIsopenicillin N synthase1.21.3.10.467
1rszDIHPurine nucleoside phosphorylase2.4.2.10.467
2ixkTDOdTDP-4-dehydrorhamnose 3,5-epimerase5.1.3.130.467
4mr72BVGamma-aminobutyric acid type B receptor subunit 1/0.467
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.466
3zoiM2WIsopenicillin N synthase1.21.3.10.466
4bfxZVXPantothenate kinase2.7.1.330.466
4rxqDUTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.466
1qiqACCIsopenicillin N synthase1.21.3.10.465
4driRAPSerine/threonine-protein kinase mTOR2.7.11.10.465
4driRAPPeptidyl-prolyl cis-trans isomerase FKBP55.2.1.80.465
2fapRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.464
2fapRADSerine/threonine-protein kinase mTOR2.7.11.10.464
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.464
3u57DH8Raucaffricine-O-beta-D-glucosidase3.2.1.1250.464
1hb1OCVIsopenicillin N synthase1.21.3.10.463
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.463
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.463
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.463
4mr92BXGamma-aminobutyric acid type B receptor subunit 1/0.463
3ggs2FDPurine nucleoside phosphorylase2.4.2.10.462
3ug8IMNAldo-keto reductase family 1 member C3/0.462
4bfsZVSPantothenate kinase2.7.1.330.462
1amoFMNNADPH--cytochrome P450 reductase/0.461
1obnASVIsopenicillin N synthase1.21.3.10.461
3dzkNMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.461
3hkuTORCarbonic anhydrase 24.2.1.10.461
4bftZVTPantothenate kinase2.7.1.330.461
1nsgRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.460
1nsgRADSerine/threonine-protein kinase mTOR2.7.11.10.460
1yw8A75Methionine aminopeptidase 2/0.460
2g1y5IGRenin3.4.23.150.460
2wnbC5PCMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 12.4.99.40.460
3s8pSAMHistone-lysine N-methyltransferase KMT5B2.1.1.430.460
1ex75GPGuanylate kinase2.7.4.80.459
1tcoFK5Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.459
1tcoFK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform3.1.3.160.459
2ejzSAHDiphthine synthase/0.459
2g1r3IGRenin3.4.23.150.459
3hl0NADMaleylacetate reductase/0.459
1gky5GPGuanylate kinase2.7.4.80.458
1h66RH1NAD(P)H dehydrogenase [quinone] 11.6.5.20.458
1lkeDOGBilin-binding protein/0.458
1pq944BOxysterols receptor LXR-beta/0.458
2gesCOKPantothenate kinase2.7.1.330.458
2zsdCOAPantothenate kinase2.7.1.330.458
3tfuPL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase2.6.1.620.458
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.458
4fapARDPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.458
4fapARDSerine/threonine-protein kinase mTOR2.7.11.10.458
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.458
1xh5R68cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.457
2getCOKPantothenate kinase2.7.1.330.457
3c1kT15Prothrombin3.4.21.50.457
3fapARDPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.457
3fapARDSerine/threonine-protein kinase mTOR2.7.11.10.457
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.457
4q0kGA3Phytohormone-binding protein/0.457
5dp2NAPCurF/0.457
1x1dSAHC-20 methyltransferase/0.456
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.456
2gevCOKPantothenate kinase2.7.1.330.455
2xiq5ADMethylmalonyl-CoA mutase, mitochondrial/0.455
2xjeU5PCytosolic purine 5'-nucleotidase3.1.3.50.455
3apwDP0Alpha-1-acid glycoprotein 2/0.455
3nubUD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.455
3vilSA0Beta-glucosidase/0.455
1bk0ACVIsopenicillin N synthase1.21.3.10.454
1c7oPPGHemolysin/0.454
2cjeDUNDUTPase/0.454
2geuCOKPantothenate kinase2.7.1.330.454
3elePLPAminotransferase/0.454
3vydVYDRenin3.4.23.150.454
4cf6CBDNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
1a9cGTPGTP cyclohydrolase 13.5.4.160.453
1lb9DNQGlutamate receptor 2/0.453
1qjfACSIsopenicillin N synthase1.21.3.10.453
1x1bSAHC-20 methyltransferase/0.453
1x1cSAHC-20 methyltransferase/0.453
1yhjR6CPyridoxal kinase2.7.1.350.453
3uzxAOM3-oxo-5-beta-steroid 4-dehydrogenase/0.453
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.453
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.453
4bfzZVZPantothenate kinase2.7.1.330.453
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.452
1z71L17Prothrombin3.4.21.50.452
1zgv501Prothrombin3.4.21.50.452
2g5w8PG12-oxophytodienoate reductase 31.3.1.420.452
2rd678PPoly [ADP-ribose] polymerase 12.4.2.300.452
2stdCRPScytalone dehydratase4.2.1.940.452
3mj4URMUDP-galactopyranose mutase/0.452
4bfuZVUPantothenate kinase2.7.1.330.452
4bfwZVWPantothenate kinase2.7.1.330.452
4cb4MGTPolymerase basic protein 2/0.452
4dy4FMNNAD(P)H dehydrogenase (quinone)/0.452
4fhd0TTSpore photoproduct lyase/0.452
4flkY10Methionine aminopeptidase 1/0.452
1esmCOAPantothenate kinase2.7.1.330.451
1ikgREXD-alanyl-D-alanine carboxypeptidase3.4.16.40.451
1rkwPNTHTH-type transcriptional regulator QacR/0.451
3e34ED1Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.451
3e34ED1Protein farnesyltransferase subunit beta2.5.1.580.451
4b68FADL-ornithine N(5)-monooxygenase/0.451
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.130.451
1ygjRMCPyridoxal kinase2.7.1.350.450
2v16C47Renin3.4.23.150.450
2xysSY9Soluble acetylcholine receptor/0.450
3k8q22APurine nucleoside phosphorylase2.4.2.10.450
3zhoFMNNAD(P)H dehydrogenase (quinone)/0.450
4bfvZVVPantothenate kinase2.7.1.330.450
4cb741GPolymerase basic protein 2/0.450
4nceMGTPolymerase basic protein 2/0.450
1blzACVIsopenicillin N synthase1.21.3.10.449
1rpwDIDHTH-type transcriptional regulator QacR/0.449
1rr6IMHPurine nucleoside phosphorylase2.4.2.10.449
2jb4A14Isopenicillin N synthase1.21.3.10.449
3dzjNMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.449
3h3r14HCollagen type IV alpha-3-binding protein/0.449
4a86H35Major pollen allergen Bet v 1-A/0.449
4bfyZVYPantothenate kinase2.7.1.330.449
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.448
2po3T4K4-dehydrase/0.448
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.448
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.448
3nytULPUDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.448
3pkeY10Methionine aminopeptidase 2/0.448
4hcy0YNTransketolase/0.448
4ms1381Gamma-aminobutyric acid type B receptor subunit 1/0.448
5stdUNNScytalone dehydratase4.2.1.940.448
7stdCRPScytalone dehydratase4.2.1.940.448
1rfgGMPPurine nucleoside phosphorylase2.4.2.10.447
2e8uIPEGeranylgeranyl pyrophosphate synthase/0.447
3dcsMZMCarbonic anhydrase 24.2.1.10.447
3dys5GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.446
1r5gAO1Methionine aminopeptidase 2/0.446
1v3q2DIPurine nucleoside phosphorylase2.4.2.10.446
2v2zCDM4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.446
3qe2FMNNADPH--cytochrome P450 reductase/0.446
4ax9N5NProthrombin3.4.21.50.446
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
4mrm2BYGamma-aminobutyric acid type B receptor subunit 1/0.446
1vf3GDNGlutathione S-transferase 32.5.1.180.445
2idvM7GEukaryotic translation initiation factor 4E-1/0.445
2iko7IGRenin3.4.23.150.445
2y6fM9FIsopenicillin N synthase1.21.3.10.445
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
3m1vCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.445
3m1vCOMMethyl-coenzyme M reductase I subunit beta2.8.4.10.445
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
3own3OXRenin3.4.23.150.445
3ziuLSSLeucyl-tRNA synthetase/0.445
4mlp2CXCryptochrome-2/0.445
1gg5E09NAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1nqvLMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.444
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
2a0yDIHPurine nucleoside phosphorylase2.4.2.10.444
2vf3GVS4-diphosphocytidyl-2-C-methyl-D-erythritol kinase/0.444
2vqzMGTPolymerase basic protein 2/0.444
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
1ta6177Prothrombin3.4.21.50.443
2iviACWIsopenicillin N synthase1.21.3.10.443
2xi4AFTAcetylcholinesterase3.1.1.70.443
2y60M8FIsopenicillin N synthase1.21.3.10.443
3dr7GPDGDP-perosamine synthase/0.443
3gwfNAPCyclohexanone monooxygenase/0.443
4b4vL34Bifunctional protein FolD/0.443
4drhRAPSerine/threonine-protein kinase mTOR2.7.11.10.443
4drhRAPPeptidyl-prolyl cis-trans isomerase FKBP55.2.1.80.443
1gzuNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 12.7.7.10.442
1pd9CO4Dihydrofolate reductase1.5.1.30.442
1pfyMSPMethionine--tRNA ligase6.1.1.100.442
1uzwCDHIsopenicillin N synthase1.21.3.10.442
2g247IGRenin3.4.23.150.442
2qimZEAClass 10 plant pathogenesis-related protein/0.442
4esoNAPPutative oxidoreductase/0.442
4psbGA3Cytokinin-specific binding protein/0.442
4stdBFSScytalone dehydratase4.2.1.940.442
4wljIK2Kynurenine--oxoglutarate transaminase 12.6.1.70.442
1rt9IMHPurine nucleoside phosphorylase2.4.2.10.441
1yw7A41Methionine aminopeptidase 2/0.441
2bn4FMNNADPH--cytochrome P450 reductase/0.441
2fhjH4ZFormylmethanofuran--tetrahydromethanopterin formyltransferase2.3.1.1010.441
3g45988cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.441
3pqbVGPPutative oxidoreductase/0.441
3qeoLLTDeoxycytidine kinase2.7.1.740.441
3tvqDQHMultifunctional cyclase-dehydratase-3-O-methyl transferase TcmN2.1.10.441
3uzxAOX3-oxo-5-beta-steroid 4-dehydrogenase/0.441
2xviFADPutative flavin-containing monooxygenase/0.440
3dd82C7Carbonic anhydrase 24.2.1.10.440
3k3ePDBHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3p0fBAUUridine phosphorylase 22.4.2.30.440
3q9bB3NAcetylpolyamine amidohydrolase/0.440
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.440
4lxjLANLanosterol 14-alpha demethylase1.14.13.700.440