1.850 Å
X-ray
2013-10-10
Name: | Polymerase basic protein 2 |
---|---|
ID: | Q2LG68_9INFA |
AC: | Q2LG68 |
Organism: | Influenza A virus ) |
Reign: | Viruses |
TaxID: | 365107 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 21.511 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.414 | 280.125 |
% Hydrophobic | % Polar |
---|---|
54.22 | 45.78 |
According to VolSite |
HET Code: | 41G |
---|---|
Formula: | C15H13N5O5 |
Molecular weight: | 343.294 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 48.29 % |
Polar Surface area: | 153.71 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-6.4824 | -1.87956 | 3.56536 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CE1 | CB | PHE- 323 | 3.85 | 0 | Hydrophobic |
ON | NZ | LYS- 339 | 2.65 | 177.78 | H-Bond (Protein Donor) |
ON | NZ | LYS- 339 | 2.65 | 0 | Ionic (Protein Cationic) |
DuAr | DuAr | HIS- 357 | 3.54 | 0 | Aromatic Face/Face |
N1 | OE1 | GLU- 361 | 2.67 | 171.88 | H-Bond (Ligand Donor) |
N2 | OE2 | GLU- 361 | 2.86 | 167.98 | H-Bond (Ligand Donor) |
O6 | NZ | LYS- 376 | 3.09 | 153.34 | H-Bond (Protein Donor) |
CM7 | CE1 | PHE- 404 | 3.72 | 0 | Hydrophobic |
CM7 | CG | GLN- 406 | 4.11 | 0 | Hydrophobic |
CM7 | CE | MET- 427 | 4.15 | 0 | Hydrophobic |