scPDB - 3p0f entry

Protein Data Bank Entry:

PDB ID : 3p0f

Resolution :1.540 Å

Experimental Method : X-ray

Deposition Date : 2010-09-28

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Uridine phosphorylase 2
ID:	UPP2_HUMAN
AC:	O95045
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.4.2.3

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	14.467
Number of residues:	24
Including
Standard Amino Acids:	24
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.312	452.250

% Hydrophobic	% Polar
51.49	48.51
According to VolSite

Ligand :

HET Code:	BAU
Formula:	C14H16N2O4
Molecular weight:	276.288 g/mol
DrugBank ID:	DB07437
Buried Surface Area:	61.68 %
Polar Surface area:	78.87 Å2

Number of
H-Bond Acceptors:	4
H-Bond Donors:	2
Rings:	2
Aromatic rings:	1
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	6

Mass center Coordinates

X	Y	Z
13.9895	-2.01795	57.8355

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
CAJ	SD	MET- 116	3.42	0	Hydrophobic	false
CAK	CE1	PHE- 219	3.77	0	Hydrophobic	false
OAB	NE2	GLN- 223	3	170.98	H-Bond (Protein Donor)	false
NAN	OE1	GLN- 223	2.83	171.5	H-Bond (Ligand Donor)	false
OAA	NH1	ARG- 225	3.35	133.89	H-Bond (Protein Donor)	false
OAA	NH2	ARG- 225	2.84	163.9	H-Bond (Protein Donor)	false
CAM	CB	GLU- 254	4.15	0	Hydrophobic	false
CAK	SD	MET- 255	4.14	0	Hydrophobic	false
CD2	CD1	LEU- 278	4.03	0	Hydrophobic	false
CD1	CD2	LEU- 279	3.83	0	Hydrophobic	false
CE1	CG1	ILE- 287	3.6	0	Hydrophobic	false
CE2	CD1	ILE- 287	3.73	0	Hydrophobic	false