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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ttm667Carbonic anhydrase 24.2.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1ttm667Carbonic anhydrase 24.2.1.11.000
1xpz4TZCarbonic anhydrase 24.2.1.10.708
3k2fNKXCarbonic anhydrase 24.2.1.10.667
2h15B19Carbonic anhydrase 24.2.1.10.658
1bnnAL1Carbonic anhydrase 24.2.1.10.653
1a42BZUCarbonic anhydrase 24.2.1.10.647
1i91INQCarbonic anhydrase 24.2.1.10.645
1bn1AL5Carbonic anhydrase 24.2.1.10.637
3dazMZMCarbonic anhydrase 24.2.1.10.636
1bn4AL9Carbonic anhydrase 24.2.1.10.629
3eft3BSCarbonic anhydrase 24.2.1.10.627
1bn3AL6Carbonic anhydrase 24.2.1.10.626
1xq04TRCarbonic anhydrase 24.2.1.10.625
3d9zD9ZCarbonic anhydrase 24.2.1.10.624
1i8zINLCarbonic anhydrase 24.2.1.10.622
3m5eJDRCarbonic anhydrase 24.2.1.10.622
1kwrSG2Carbonic anhydrase 24.2.1.10.620
3dcsMZMCarbonic anhydrase 24.2.1.10.620
4n16CHDCarbonic anhydrase 24.2.1.10.620
4kniE1ECarbonic anhydrase 24.2.1.10.619
3sbhE65Carbonic anhydrase 24.2.1.10.617
1i9nIOACarbonic anhydrase 24.2.1.10.616
1g52F2BCarbonic anhydrase 24.2.1.10.612
1zsbAZMCarbonic anhydrase 24.2.1.10.612
1if4FBSCarbonic anhydrase 24.2.1.10.611
1g1dFSBCarbonic anhydrase 24.2.1.10.610
1if6FBUCarbonic anhydrase 24.2.1.10.610
3dc3AZMCarbonic anhydrase 24.2.1.10.609
1i90INMCarbonic anhydrase 24.2.1.10.605
1bnvAL7Carbonic anhydrase 24.2.1.10.604
1bnwTPDCarbonic anhydrase 24.2.1.10.602
1g4jFFBCarbonic anhydrase 24.2.1.10.601
3ffpLC1Carbonic anhydrase 24.2.1.10.601
2eu3FF3Carbonic anhydrase 24.2.1.10.599
4itp1GDCarbonic anhydrase 24.2.1.10.599
1bntAL2Carbonic anhydrase 24.2.1.10.596
3hkuTORCarbonic anhydrase 24.2.1.10.595
3b4fTUOCarbonic anhydrase 24.2.1.10.592
3dd82C7Carbonic anhydrase 24.2.1.10.590
2wehFB1Carbonic anhydrase 24.2.1.10.588
1if5FBTCarbonic anhydrase 24.2.1.10.587
4pxxCHDCarbonic anhydrase 24.2.1.10.585
3po6DT9Carbonic anhydrase 24.2.1.10.584
3mhoJ43Carbonic anhydrase 24.2.1.10.583
1g4oBSBCarbonic anhydrase 24.2.1.10.581
3oikWZBCarbonic anhydrase 24.2.1.10.580
3qykIE2Carbonic anhydrase 24.2.1.10.580
2x7tWZBCarbonic anhydrase 24.2.1.10.578
4itoMPXCarbonic anhydrase 24.2.1.10.578
1bnuAL3Carbonic anhydrase 24.2.1.10.577
1i9qIOFCarbonic anhydrase 24.2.1.10.577
1oklMNSCarbonic anhydrase 24.2.1.10.577
3oysOYSCarbonic anhydrase 24.2.1.10.577
3n0nP9BCarbonic anhydrase 24.2.1.10.576
1g45FSBCarbonic anhydrase 24.2.1.10.575
1kwqSG1Carbonic anhydrase 24.2.1.10.575
3igpDT7Carbonic anhydrase 24.2.1.10.575
4kap1QVCarbonic anhydrase 24.2.1.10.575
2wd2MS5Carbonic anhydrase 24.2.1.10.574
3kigDA4Carbonic anhydrase 24.2.1.10.574
5fltVJJCarbonic anhydrase 24.2.1.10.574
4ht2V50Carbonic anhydrase 124.2.1.10.573
1if7SBRCarbonic anhydrase 24.2.1.10.571
3mhlJ71Carbonic anhydrase 24.2.1.10.571
3mzcS6ICarbonic anhydrase 24.2.1.10.571
3dccD9ZCarbonic anhydrase 24.2.1.10.570
3m96E38Carbonic anhydrase 24.2.1.10.570
3ni5C1HCarbonic anhydrase 24.2.1.10.570
3f7uAG4Carbonic anhydrase 44.2.1.10.567
3mnaDWHCarbonic anhydrase 24.2.1.10.567
3oimVZ5Carbonic anhydrase 24.2.1.10.565
3mdzEZLCarbonic anhydrase 74.2.1.10.564
3m2nJ74Carbonic anhydrase 24.2.1.10.563
1cnwEG1Carbonic anhydrase 24.2.1.10.562
3s8xE59Carbonic anhydrase 24.2.1.10.562
1cilETSCarbonic anhydrase 24.2.1.10.561
2weoFBWCarbonic anhydrase 24.2.1.10.561
3d8wD8WCarbonic anhydrase 24.2.1.10.560
3sbiE90Carbonic anhydrase 24.2.1.10.560
3m98E02Carbonic anhydrase 24.2.1.10.559
3saxE50Carbonic anhydrase 24.2.1.10.559
3t82SG4Carbonic anhydrase 24.2.1.10.559
4ilx1EZCarbonic anhydrase 24.2.1.10.559
1bnmAL8Carbonic anhydrase 24.2.1.10.557
1jd0AZMCarbonic anhydrase 124.2.1.10.556
3m2yBE0Carbonic anhydrase 24.2.1.10.556
3nb5R21Carbonic anhydrase 24.2.1.10.556
3v2jAZMCarbonic anhydrase 24.2.1.10.556
4knjE1FCarbonic anhydrase 24.2.1.10.556
4m2rBZ1Carbonic anhydrase 24.2.1.10.556
1bnqAL4Carbonic anhydrase 24.2.1.10.555
4bf6X0QCarbonic anhydrase 24.2.1.10.553
4kp8E1GCarbonic anhydrase 124.2.1.10.553
3betCTFCarbonic anhydrase 24.2.1.10.552
3n2pAYXCarbonic anhydrase 24.2.1.10.552
4iwz1GOCarbonic anhydrase 24.2.1.10.552
1g54FFBCarbonic anhydrase 24.2.1.10.550
3mmfD9HCarbonic anhydrase 24.2.1.10.550
2x7uWZACarbonic anhydrase 24.2.1.10.548
3ml2SU0Carbonic anhydrase 24.2.1.10.546
1if8SBSCarbonic anhydrase 24.2.1.10.545
2wejFB2Carbonic anhydrase 24.2.1.10.545
3fw3ETSCarbonic anhydrase 44.2.1.10.545
3m67E36Carbonic anhydrase 24.2.1.10.545
2powI7CCarbonic anhydrase 24.2.1.10.544
2wegFBVCarbonic anhydrase 24.2.1.10.543
3n3jWWVCarbonic anhydrase 24.2.1.10.542
3s9tE49Carbonic anhydrase 24.2.1.10.542
3t84SG6Carbonic anhydrase 24.2.1.10.542
1eouSMSCarbonic anhydrase 24.2.1.10.541
3bl1BL1Carbonic anhydrase 24.2.1.10.539
1okmSABCarbonic anhydrase 24.2.1.10.537
1oq5CELCarbonic anhydrase 24.2.1.10.537
3dbuD8WCarbonic anhydrase 24.2.1.10.537
4k13ETSCarbonic anhydrase 24.2.1.10.537
1cnyEG3Carbonic anhydrase 24.2.1.10.536
3zncBZ1Carbonic anhydrase 44.2.1.10.536
4mo82VQCarbonic anhydrase 24.2.1.10.535
1oknSTBCarbonic anhydrase 24.2.1.10.534
4kp5E1FCarbonic anhydrase 124.2.1.10.534
1i9pIOECarbonic anhydrase 24.2.1.10.531
3f4xKLTCarbonic anhydrase 24.2.1.10.531
4m2vBZ1Carbonic anhydrase 24.2.1.10.531
4knmE1ECarbonic anhydrase 134.2.1.10.530
4k0tD9ZCarbonic anhydrase 24.2.1.10.529
4xiwAZMCarbonic anhydrase, alpha type/0.529
3oy0OY0Carbonic anhydrase 24.2.1.10.527
2h4nAZMCarbonic anhydrase 24.2.1.10.526
3dcwEZLCarbonic anhydrase 24.2.1.10.526
3n4bWWZCarbonic anhydrase 24.2.1.10.523
3f7bAG5Carbonic anhydrase 44.2.1.10.521
3m40J45Carbonic anhydrase 24.2.1.10.521
4bf19FKCarbonic anhydrase 24.2.1.10.520
5fl49FKCarbonic anhydrase 94.2.1.10.520
3dd0EZLCarbonic anhydrase 24.2.1.10.519
4k0zMZMCarbonic anhydrase 24.2.1.10.516
3mhcARZCarbonic anhydrase 24.2.1.10.514
4lu3AZMCarbonic anhydrase 144.2.1.10.514
3oyqOYQCarbonic anhydrase 24.2.1.10.513
4uovAZMCarbonate dehydratase/0.508
3p62FMNPentaerythritol tetranitrate reductase/0.507
4x5sAZMCarbonic anhydrase (Carbonate dehydratase)/0.506
1ydaAZMCarbonic anhydrase 24.2.1.10.505
1cnxEG2Carbonic anhydrase 24.2.1.10.503
3p5lIT5Carbonic anhydrase 24.2.1.10.503
1rj6AZMCarbonic anhydrase 144.2.1.10.502
3mhiJ90Carbonic anhydrase 24.2.1.10.501
3t85SG7Carbonic anhydrase 24.2.1.10.499
2q1qOSPCarbonic anhydrase 24.2.1.10.496
3p74FMNPentaerythritol tetranitrate reductase/0.494
3myqE27Carbonic anhydrase 24.2.1.10.492
7stdCRPScytalone dehydratase4.2.1.940.490
2vteIK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.487
4bfxZVXPantothenate kinase2.7.1.330.485
1h51FMNPentaerythritol tetranitrate reductase/0.483
4dz7D02Carbonic anhydrase 24.2.1.10.483
3l14I7BCarbonic anhydrase 24.2.1.10.477
4b4vL34Bifunctional protein FolD/0.477
4q71FADBifunctional protein PutA/0.477
1vyrFMNPentaerythritol tetranitrate reductase/0.476
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.476
1h50FMNPentaerythritol tetranitrate reductase/0.475
3qe2FMNNADPH--cytochrome P450 reductase/0.475
2vtdLKMUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.474
3apwDP0Alpha-1-acid glycoprotein 2/0.474
4bfvZVVPantothenate kinase2.7.1.330.472
3lxeTORCarbonic anhydrase 14.2.1.10.470
2abbFMNPentaerythritol tetranitrate reductase/0.469
2cy0NAPShikimate dehydrogenase (NADP(+))/0.469
2g1s4IGRenin3.4.23.150.469
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.468
2g1n1IGRenin3.4.23.150.467
2lfoGCHFatty acid-binding protein, liver/0.467
4boeCLRJapanin/0.467
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.466
1gpdNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.464
3p8iFMNPentaerythritol tetranitrate reductase/0.464
2vn1FK5Peptidylprolyl isomerase/0.463
4r81FMNPredicted NADH dehydrogenase/0.463
3gwfNAPCyclohexanone monooxygenase/0.461
4j8tDOGUncharacterized PhzA/B-like protein PA3332/0.461
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.461
1jf2CZHObelin/0.460
2qimZEAClass 10 plant pathogenesis-related protein/0.460
1bwsNDPGDP-L-fucose synthase/0.459
3f03FMNPentaerythritol tetranitrate reductase/0.459
4iah1DXAlr2278 protein/0.459
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.458
2rlcCHDCholoylglycine hydrolase3.5.1.240.458
4hu1V13Carbonic anhydrase 134.2.1.10.458
4psbGA3Cytokinin-specific binding protein/0.458
1lkdBP6Biphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.457
4knnE1FCarbonic anhydrase 134.2.1.10.457
2nnqT4BFatty acid-binding protein, adipocyte/0.456
3aosJH2Hemolymph juvenile hormone binding protein/0.456
3rz8RZ8Carbonic anhydrase 24.2.1.10.456
3uk6ADPRuvB-like 23.6.4.120.456
4dbc3QPAspartate aminotransferase2.6.1.10.456
4p9dTMPDeoxycytidylate deaminase/0.456
1a5bIGPTryptophan synthase alpha chain/0.455
1akbPPDAspartate aminotransferase, mitochondrial2.6.1.10.455
2rqfJH3Hemolymph juvenile hormone binding protein/0.455
3h3qH13Collagen type IV alpha-3-binding protein/0.455
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.454
1fmjRTLRetinol dehydratase/0.454
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.454
2xw7NDPDihydrofolate reductase/0.454
3p82FMNPentaerythritol tetranitrate reductase/0.454
4bfwZVWPantothenate kinase2.7.1.330.454
1xe55FEPlasmepsin-23.4.23.390.453
3l6jZ90Alr2278 protein/0.453
4iae1DXAlr2278 protein/0.453
4q0kGA3Phytohormone-binding protein/0.453
2gv8NDPThiol-specific monooxygenase1.14.130.452
2q1uNADPutative nucleotide sugar epimerase/ dehydratase/0.452
2zvcSAHPrecorrin-3 C17-methyltransferase/0.452
3fr5I4AFatty acid-binding protein, adipocyte/0.452
5fd8A5APutative carboxypeptidase yocD/0.452
6stdMS2Scytalone dehydratase4.2.1.940.452
1x1aSAMC-20 methyltransferase/0.451
1xe65FPPlasmepsin-23.4.23.390.451
1xddAAYIntegrin alpha-L/0.450
2pbwDOQGlutamate receptor ionotropic, kainate 1/0.450
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.450
3gncQQQGlutaryl-CoA dehydrogenase/0.450
4bftZVTPantothenate kinase2.7.1.330.450
1gtrATPGlutamine--tRNA ligase6.1.1.180.449
1m13HYFNuclear receptor subfamily 1 group I member 2/0.449
2ga2A19Methionine aminopeptidase 2/0.449
2zbaZBATrichothecene 3-O-acetyltransferase/0.449
4jqh1MFAlr2278 protein/0.449
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.448
3p84FMNPentaerythritol tetranitrate reductase/0.448
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.447
1o9bNAIQuinate/shikimate dehydrogenase/0.447
2g247IGRenin3.4.23.150.447
2i4qUA4Renin3.4.23.150.447
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.447
4kbyC2EStimulator of interferon genes protein/0.447
4n1gCEIObelin/0.447
4oe4NADDelta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial1.2.1.880.447
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.446
1v35NAIEnoyl-ACP reductase/0.446
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.446
2wqpWQPPolysialic acid capsule biosynthesis protein SiaC/0.446
3imgBZ2Pantothenate synthetase6.3.2.10.446
3qsaTA7Anthranilate phosphoribosyltransferase/0.446
4b2gV1NUncharacterized protein/0.446
4dpf0LGBeta-secretase 13.4.23.460.446
1nvtNAPShikimate dehydrogenase (NADP(+))/0.445
1toiHCIAspartate aminotransferase2.6.1.10.445
3h3t16HCollagen type IV alpha-3-binding protein/0.445
4bb3KKAIsopenicillin N synthase1.21.3.10.445
1qyxASDEstradiol 17-beta-dehydrogenase 11.1.1.620.444
1zg32HIIsoflavone 4'-O-methyltransferase/0.444
2ft9CHDFatty acid-binding protein 2, liver/0.444
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.444
3jyqNADQuinate/shikimate dehydrogenase (NAD(+))/0.444
4jicFMNGTN Reductase/0.444
1icpFMN12-oxophytodienoate reductase 11.3.1.420.443
1rzuADPGlycogen synthase 12.4.1.210.443
1tojHCIAspartate aminotransferase2.6.1.10.443
1towCRZFatty acid-binding protein, adipocyte/0.443
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
2j07HDFDeoxyribodipyrimidine photo-lyase4.1.99.30.443
3lqfNADGalactitol dehydrogenase/0.443
3oqkS52Renin3.4.23.150.443
3zhtTD9Multifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.443
4a84DXCMajor pollen allergen Bet v 1-A/0.443
4isg1FYGlucokinase2.7.1.20.443
4ycoFMNtRNA-dihydrouridine(16) synthase/0.443
1kkq471Peroxisome proliferator-activated receptor alpha/0.442
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.442
3g1rFIT3-oxo-5-beta-steroid 4-dehydrogenase/0.442
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.442
1cq8PY6Aspartate aminotransferase2.6.1.10.441
1j37X8ZAngiotensin-converting enzyme3.4.15.10.441
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.441
1q45FMN12-oxophytodienoate reductase 31.3.1.420.441
2d3aADPGlutamine synthetase root isozyme 36.3.1.20.441
2g226IGRenin3.4.23.150.441
3af1GDPPantothenate kinase2.7.1.330.441
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.441
3p67FMNPentaerythritol tetranitrate reductase/0.441
3qt62P0Mevalonate diphosphate decarboxylase/0.441
3stdMQ0Scytalone dehydratase4.2.1.940.441
3zhuTD8Multifunctional 2-oxoglutarate metabolism enzyme1.2.4.20.441
4a81DXCMajor pollen allergen Bet v 1-A/0.441
4e2dFMNDehydrogenase/0.441
4mlp2CXCryptochrome-2/0.441
1akcPPEAspartate aminotransferase, mitochondrial2.6.1.10.440
1bdmNAXMalate dehydrogenase/0.440
2bxoOPBSerum albumin/0.440
2dxiATPGlutamate--tRNA ligase6.1.1.170.440
2qw034Z4-chlorobenzoyl CoA ligase/0.440
2xszATPRuvB-like 23.6.4.120.440
2xveFADPutative flavin-containing monooxygenase/0.440
3otwCOAPhosphopantetheine adenylyltransferase/0.440
4e0u0MVCyclic dipeptide N-prenyltransferase/0.440