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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Protein Data Bank Entry:

1j37

2.400 Å

X-ray

2003-01-20

Interactomes:
Molecular Function:
Binding Site :

Uniprot Annotation

Name:Angiotensin-converting enzyme
ID:ACE_DROME
AC:Q10714
Organism:Drosophila melanogaster
Reign:Eukaryota
TaxID:7227
EC Number:3.4.15.1


Chains:

Chain Name:Percentage of Residues
within binding site
A100 %


Ligand binding site composition:

B-Factor:17.856
Number of residues:23
Including
Standard Amino Acids: 22
Non Standard Amino Acids: 1
Water Molecules: 0
Cofactors:
Metals: ZN

Cavity properties

LigandabilityVolume (Å3)
0.7851282.500

% Hydrophobic% Polar
34.2165.79
According to VolSite

Ligand :
1j37_1 Structure
HET Code: X8Z
Formula: C9H14NO3S
Molecular weight: 216.277 g/mol
DrugBank ID: DB01197
Buried Surface Area:58.04 %
Polar Surface area: 99.24 Å2
Number of
H-Bond Acceptors: 4
H-Bond Donors: 1
Rings: 1
Aromatic rings: 0
Anionic atoms: 1
Cationic atoms: 0
Rule of Five Violation: 0
Rotatable Bonds: 3

Mass center Coordinates

XYZ
12.6581-3.5861418.4324


Binding mode :
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Binding mode
BioSolveIT Image generated by PoseView
Protein
Binding Site
Ligand
Interaction pattern
hydrophobic (CA)
aromatic (CZ)
hydrogen bond acceptor (O)
hydrogen bond acceptor/donor (OG)
hydrogen bond donor (N)
positively ionized (NZ)
negatively ionized (OD1)
metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT
BioSolveIT


LigandProteinInteraction
AtomAtomResidueDistance
(Å)
Angle (°)Type
O2NE2GLN- 2652.95155.96H-Bond
(Protein Donor)
O3NE2HIS- 3373.19147.6H-Bond
(Protein Donor)
C3CBALA- 3384.420Hydrophobic
C7CZPHE- 4413.860Hydrophobic
O2NZLYS- 4952.840Ionic
(Protein Cationic)
O1NE2HIS- 4972.75140.15H-Bond
(Protein Donor)
O2OHTYR- 5042.91161.99H-Bond
(Protein Donor)
C1CE1TYR- 5073.880Hydrophobic
C7CD1TYR- 5074.20Hydrophobic