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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iqg NAP Short-chain dehydrogenase/reductase SDR

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4iqg NAPShort-chain dehydrogenase/reductase SDR / 1.320
4dbz NDPPutative ketoacyl reductase 1.3.1 0.971
1x7g NAPPutative ketoacyl reductase 1.3.1 0.964
1x7h NDPPutative ketoacyl reductase 1.3.1 0.955
3qrw NDPPutative ketoacyl reductase 1.3.1 0.934
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.926
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.923
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.900
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.894
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.887
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.886
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.858
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.855
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.854
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.853
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.850
3wds NADNADH-dependent quinuclidinone reductase / 0.849
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.848
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.848
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.847
4wec NADShort chain dehydrogenase / 0.847
4kwh NAPReductase homolog / 0.843
5jla NADPutative short-chain dehydrogenase/reductase / 0.841
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.839
4fn4 NADShort chain dehydrogenase / 0.838
4qed NAPElxO / 0.838
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.836
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.836
3ai2 NDPNADPH-sorbose reductase / 0.835
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.835
4hwk NAPSepiapterin reductase 1.1.1.153 0.833
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.830
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.830
3o26 NDPSalutaridine reductase / 0.827
1oaa NAPSepiapterin reductase 1.1.1.153 0.826
4yai NAIC alpha-dehydrogenase / 0.826
3ak4 NADNADH-dependent quinuclidinone reductase / 0.825
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.823
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.822
4b79 NADProbable short-chain dehydrogenase / 0.819
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.818
2dte NAIGlucose 1-dehydrogenase related protein / 0.816
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.815
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.815
4bmv NAPShort-chain dehydrogenase / 0.809
1w4z NAPPutative ketoacyl reductase 1.3.1 0.808
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.808
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.807
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.806
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.803
2jah NDPClavaldehyde dehydrogenase / 0.801
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.801
2bd0 NAPSepiapterin reductase / 0.799
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.799
3sju NDPKeto reductase / 0.799
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.797
4j7u NAPSepiapterin reductase 1.1.1.153 0.797
3geg NADShort-chain dehydrogenase/reductase SDR / 0.793
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.791
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.791
3tn7 NJPShort-chain alcohol dehydrogenase / 0.790
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.783
2yy7 NADL-threonine dehydrogenase / 0.783
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.783
3sx2 NADUncharacterized protein / 0.782
3s55 NADPutative short-chain dehydrogenase/reductase / 0.780
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.780
4yag NAIC alpha-dehydrogenase / 0.780
4qec NAPElxO / 0.779
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.778
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.778
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.777
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.777
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.776
4u7w NDPMxaA / 0.772
3p19 NDPPutative blue fluorescent protein / 0.769
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.769
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.768
1ae1 NAPTropinone reductase 1 / 0.767
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.767
4j7x NAPSepiapterin reductase 1.1.1.153 0.767
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.766
1ipe NDPTropinone reductase 2 1.1.1.236 0.759
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.759
2wsb NADGalactitol dehydrogenase / 0.759
1pr9 NAPL-xylulose reductase 1.1.1.10 0.758
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.758
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.757
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.754
3uce NDPDehydrogenase / 0.751
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.749
3ai3 NDPNADPH-sorbose reductase / 0.749
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.747
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.747
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.744
3u4c NDPNADPH-dependent reductase BacG / 0.744
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.743
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.743
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.742
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.741
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.740
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.740
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.739
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.738
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.737
3mje NDPAmphB / 0.733
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.731
1zem NADXylitol dehydrogenase / 0.730
2wdz NADGalactitol dehydrogenase / 0.730
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.730
3d3w NAPL-xylulose reductase 1.1.1.10 0.729
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.729
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.726
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.725
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.725
1sny NAPLD36273p / 0.724
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.723
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.723
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.722
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.721
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.720
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.720
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.719
2c29 NAPDihydroflavonol 4-reductase / 0.718
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.717
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.716
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.715
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.715
1g1a NADdTDP-glucose 4,6-dehydratase / 0.713
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.713
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.712
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.712
3tsc NADUncharacterized protein / 0.710
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.708
1hdo NAPFlavin reductase (NADPH) / 0.707
1i3l NADUDP-glucose 4-epimerase / 0.707
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.707
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.706
1iy8 NADLevodione reductase / 0.705
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.705
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.705
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.704
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.704
2yut NAPPutative short-chain oxidoreductase / 0.703
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.702
3icp NADNAD-dependent epimerase/dehydratase / 0.701
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.699
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.698
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
2i3g NAPN-acetyl-gamma-glutamyl-phosphate reductase 1.2.1.38 0.696
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.695
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.694
3a4v NADNDP-sugar epimerase / 0.694
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.694
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.694
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.693
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.693
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.693
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.692
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.692
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.691
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.691
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.690
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.690
3pvz NADUDP-N-acetylglucosamine 4,6-dehydratase / 0.690
1ek5 NADUDP-glucose 4-epimerase / 0.689
4clo NAPPteridine reductase / 0.689
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.688
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
3ajr NADNDP-sugar epimerase / 0.686
4egb NADdTDP-glucose 4,6-dehydratase / 0.686
3ko8 NADNAD-dependent epimerase/dehydratase / 0.685
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.685
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.685
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.684
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.684
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.684
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.684
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.683
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.683
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.682
2p5y NADUDP-glucose 4-epimerase / 0.682
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
3lqf NADGalactitol dehydrogenase / 0.681
2bfo NDPPteridine reductase 1 1.5.1.33 0.679
4o1m NADEnoyl-acyl carrier reductase / 0.679
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
1orr NADCDP-paratose 2-epimerase / 0.677
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.677
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.676
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.676
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.675
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
2pr2 DG1Enoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.675
4b4o NDPEpimerase family protein SDR39U1 / 0.675
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.675
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.674
1kc1 NDPdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.674
3tox NAPPutative oxidoreductase / 0.674
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.673
3wmx NADNAD dependent epimerase/dehydratase / 0.673
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.673
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.672
1sby NADAlcohol dehydrogenase 1.1.1.1 0.671
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.671
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.670
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.670
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.669
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.669
3bmo NAPPteridine reductase / 0.667
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.667
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.665
1xkq NDPUncharacterized protein / 0.665
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.665
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.664
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.663
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.663
1vrw NAIEnoyl-ACP reductase / 0.662
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.661
3a9w NADNDP-sugar epimerase / 0.660
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.660
5lc1 NADL-threonine 3-dehydrogenase / 0.660
4hxy NDPPlm1 / 0.659
2p5u NADUDP-glucose 4-epimerase / 0.658
3au8 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.658
1i36 NAPConserved protein / 0.657
2ewm NAD(S)-1-Phenylethanol dehydrogenase 1.1.1.311 0.657
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.657
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.656
3aw9 NADNAD-dependent epimerase/dehydratase / 0.655
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.652
3orf NADDihydropteridine reductase 1.5.1.34 0.651
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.650