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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dc1 NDP Putative ketoacyl reductase 1.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
4dc1 NDPPutative ketoacyl reductase 1.3.1 1.385
4dbz NDPPutative ketoacyl reductase 1.3.1 1.217
1x7h NDPPutative ketoacyl reductase 1.3.1 1.125
4dc0 NDPPutative ketoacyl reductase 1.3.1 1.120
1w4z NAPPutative ketoacyl reductase 1.3.1 1.094
1x7g NAPPutative ketoacyl reductase 1.3.1 1.034
3ai2 NDPNADPH-sorbose reductase / 0.977
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.975
3wds NADNADH-dependent quinuclidinone reductase / 0.958
3qrw NDPPutative ketoacyl reductase 1.3.1 0.956
3sju NDPKeto reductase / 0.953
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.949
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.944
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.943
4kwh NAPReductase homolog / 0.926
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.919
4b79 NADProbable short-chain dehydrogenase / 0.919
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.909
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.906
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.901
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.896
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.891
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.889
3ai3 NDPNADPH-sorbose reductase / 0.885
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.879
3p19 NDPPutative blue fluorescent protein / 0.873
2wsb NADGalactitol dehydrogenase / 0.872
3tn7 NJPShort-chain alcohol dehydrogenase / 0.872
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.869
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.865
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.861
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.861
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.861
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.860
4bmv NAPShort-chain dehydrogenase / 0.859
1ipe NDPTropinone reductase 2 1.1.1.236 0.858
4fn4 NADShort chain dehydrogenase / 0.857
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.856
2jah NDPClavaldehyde dehydrogenase / 0.854
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.853
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.851
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.850
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.846
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.845
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.844
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.843
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.843
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.840
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.839
3l77 NJPShort-chain alcohol dehydrogenase / 0.839
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.839
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.837
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.833
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.831
2bd0 NAPSepiapterin reductase / 0.830
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.828
4yag NAIC alpha-dehydrogenase / 0.826
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.825
4qed NAPElxO / 0.824
3tsc NADUncharacterized protein / 0.823
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.820
4hwk NAPSepiapterin reductase 1.1.1.153 0.817
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.815
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.815
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.815
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.814
3uce NDPDehydrogenase / 0.814
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.812
2dte NAIGlucose 1-dehydrogenase related protein / 0.810
4j7u NAPSepiapterin reductase 1.1.1.153 0.808
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.807
3ak4 NADNADH-dependent quinuclidinone reductase / 0.807
3o26 NDPSalutaridine reductase / 0.807
5d2e NAPMlnE / 0.807
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.806
5jla NADPutative short-chain dehydrogenase/reductase / 0.806
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.805
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.799
4qec NAPElxO / 0.798
1pr9 NAPL-xylulose reductase 1.1.1.10 0.797
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.796
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.796
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.796
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.796
4hxy NDPPlm1 / 0.795
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.794
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.791
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.790
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.790
2c29 NAPDihydroflavonol 4-reductase / 0.788
3r3s NADPutative oxidoreductase / 0.788
4imp NDPPolyketide synthase extender modules 3-4 / 0.787
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.786
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.784
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.784
3d3w NAPL-xylulose reductase 1.1.1.10 0.784
3u4c NDPNADPH-dependent reductase BacG / 0.783
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.783
1ae1 NAPTropinone reductase 1 / 0.782
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.782
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.780
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.778
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.777
4wec NADShort chain dehydrogenase / 0.777
3sx2 NADUncharacterized protein / 0.776
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.775
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.775
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.775
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.770
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.768
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.768
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.766
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.765
3s55 NADPutative short-chain dehydrogenase/reductase / 0.763
4yai NAIC alpha-dehydrogenase / 0.763
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.761
3h4v NAPPteridine reductase 1 1.5.1.33 0.761
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.759
1oaa NAPSepiapterin reductase 1.1.1.153 0.755
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.755
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.754
3icp NADNAD-dependent epimerase/dehydratase / 0.754
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.754
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.750
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.750
2yy7 NADL-threonine dehydrogenase / 0.749
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.748
2bfo NDPPteridine reductase 1 1.5.1.33 0.747
3geg NADShort-chain dehydrogenase/reductase SDR / 0.747
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.747
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.746
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.745
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.745
2wdz NADGalactitol dehydrogenase / 0.744
5jyd NADShort chain dehydrogenase / 0.743
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.742
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.741
2yut NAPPutative short-chain oxidoreductase / 0.741
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.740
4u7w NDPMxaA / 0.739
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.738
2p5u NADUDP-glucose 4-epimerase / 0.738
4clo NAPPteridine reductase / 0.738
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.737
3mje NDPAmphB / 0.737
3tox NAPPutative oxidoreductase / 0.735
4j7x NAPSepiapterin reductase 1.1.1.153 0.735
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.732
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.732
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.732
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.731
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.728
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.727
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.726
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.726
4eso NAPPutative oxidoreductase / 0.726
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.723
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.723
3ko8 NADNAD-dependent epimerase/dehydratase / 0.723
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.721
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.721
3bmo NAPPteridine reductase / 0.718
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.718
5j23 A2RPutative 2-hydroxyacid dehydrogenase / 0.718
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.717
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.716
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.716
1xkq NDPUncharacterized protein / 0.715
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.713
1sby NADAlcohol dehydrogenase 1.1.1.1 0.711
1i3l NADUDP-glucose 4-epimerase / 0.710
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.710
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.710
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.710
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.707
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.707
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.706
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.706
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.706
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.705
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.705
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.704
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.703
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.703
1orr NADCDP-paratose 2-epimerase / 0.700
5ein NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.700
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.699
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.698
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.698
5lc1 NADL-threonine 3-dehydrogenase / 0.698
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
3a4v NADNDP-sugar epimerase / 0.696
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.696
5eio NAP[LysW]-L-2-aminoadipate 6-phosphate reductase / 0.695
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.693
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.692
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.689
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.688
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.686
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.685
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.685
2p5y NADUDP-glucose 4-epimerase / 0.684
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.682
3aw9 NADNAD-dependent epimerase/dehydratase / 0.682
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.681
1zem NADXylitol dehydrogenase / 0.680
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.680
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.680
1e7y NDPGlucose-6-phosphate 1-dehydrogenase / 0.679
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.679
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.679
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.678
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.677
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.677
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
3abi NADUncharacterized protein / 0.673
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.673
4xgi NADGlutamate dehydrogenase / 0.673
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.670
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.670
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.669
1sny NAPLD36273p / 0.668
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.668
3phi NDPShikimate dehydrogenase (NADP(+)) / 0.667
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.666
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.665
1zha PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.662
3h2s NDPPutative NADH-flavin reductase / 0.662
1iy8 NADLevodione reductase / 0.660
1t8x PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4wji NAPPutative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase / 0.660
4xyb NDPFormate dehydrogenase / 0.660
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.659
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.657
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.656
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.656
3iup NDPPossible NADH oxidoreductase / 0.656
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.655
5ero 210Fusicoccadiene synthase 2.5.1.29 0.655
2rcy NAPPyrroline-5-carboxylate reductase / 0.654
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.654
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.653
1g1a NADdTDP-glucose 4,6-dehydratase / 0.653
3au8 NDP1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.653
3pef NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.653
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.653
1i36 NAPConserved protein / 0.652
4zwg DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.652
1ek5 NADUDP-glucose 4-epimerase / 0.651
2jl1 NAPTriphenylmethane reductase / 0.651
2vq3 NAPMetalloreductase STEAP3 / 0.651
2x86 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.650
4y9d NAIC alpha-dehydrogenase / 0.650