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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3uxv GUN NADPH-dependent 7-cyano-7-deazaguanine reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3uxv GUNNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.775
1hpz AAPGag-Pol polyprotein 2.7.7.49 0.744
1jum BERHTH-type transcriptional regulator QacR / 0.744
1kbo 340NAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.744
1qvu PRLHTH-type transcriptional regulator QacR / 0.744
1sqi 8694-hydroxyphenylpyruvate dioxygenase / 0.744
2a3b CFFEndochitinase B1 3.2.1.14 0.744
2g97 DGBNicotinamide phosphoribosyltransferase 2.4.2.12 0.744
2j3q TFLAcetylcholinesterase 3.1.1.7 0.744
2jfz 003Glutamate racemase / 0.744
2jle I15Reverse transcriptase/RNaseH / 0.744
2l98 STLTroponin C, slow skeletal and cardiac muscles / 0.744
2vcq D25Hematopoietic prostaglandin D synthase / 0.744
2vcw ZZAHematopoietic prostaglandin D synthase / 0.744
2x1z PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.744
2x21 PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.744
2ybu CX9Acidic mammalian chitinase 3.2.1.14 0.744
3arv SAUChitinase A / 0.744
3arz I5IChitinase A / 0.744
3dyl IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.744
3dys IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.744
3gus N11Glutathione S-transferase P 2.5.1.18 0.744
3h18 PMSEsterase/lipase / 0.744
3hth PRLEbrA repressor / 0.744
3hyw DCQSulfide-quinone reductase / 0.744
3iis PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.744
3irx UDRGag-Pol polyprotein 2.7.7.49 0.744
3lg5 BTMEpi-isozizaene synthase 4.2.3.37 0.744
3mdv CL6Cholesterol 24-hydroxylase / 0.744
3n3z IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A / 0.744
3nf7 CIWGag-Pol polyprotein / 0.744
3nfa CBJGag-Pol polyprotein / 0.744
3ox3 4X4Ribosyldihydronicotinamide dehydrogenase [quinone] / 0.744
3qwh KMP17beta-hydroxysteroid dehydrogenase / 0.744
3qwi CUE17beta-hydroxysteroid dehydrogenase / 0.744
4b1f KRHGlutamate racemase / 0.744
4br3 U85Choline kinase alpha 2.7.1.32 0.744
4chz H75Integrase / 0.744
4cjw CBJIntegrase / 0.744
4dyp 0MSNucleoprotein / 0.744
4e4q RRHPeroxisome proliferator-activated receptor gamma / 0.744
4fiz CUE17beta-hydroxysteroid dehydrogenase / 0.744
4fj1 GEN17beta-hydroxysteroid dehydrogenase / 0.744
4hg7 NUTE3 ubiquitin-protein ligase Mdm2 6.3.2 0.744
4i8v BHFCytochrome P450 1A1 1.14.14.1 0.744
4iks TFDMethionine aminopeptidase 1 / 0.744
4ra3 TFXBeta-2-microglobulin / 0.744
3rzp PRFNADPH-dependent 7-cyano-7-deazaguanine reductase / 0.738
2g0g SP0Peroxisome proliferator-activated receptor gamma / 0.691
2kfx WW7Troponin C, slow skeletal and cardiac muscles / 0.691
2vcx D26Hematopoietic prostaglandin D synthase / 0.691
2wey EV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.691
4fgj 1PQRibosyldihydronicotinamide dehydrogenase [quinone] / 0.691
4ikr PVPMethionine aminopeptidase 1 / 0.691
4ikt TFVMethionine aminopeptidase 1 / 0.691
4iku SHXMethionine aminopeptidase 1 / 0.691
2o8h 227cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.688
3g49 3G4Corticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.684
2nm2 NEUDihydroneopterin aldolase / 0.670
4xcz FONQdtf / 0.665
3cne FMNPutative protease I / 0.660
3pm0 BHFCytochrome P450 1B1 / 0.660
4bfq 083Soluble acetylcholine receptor / 0.660
4yp0 5IQHistidyl-tRNA synthetase, putative / 0.660
2xzg VH1Clathrin heavy chain 1 / 0.659
4fgc PQ0NADPH-dependent 7-cyano-7-deazaguanine reductase 1.7.1.13 0.658
3o8t BMUMitogen-activated protein kinase 14 / 0.657
3rv7 RVBSalicylate synthase / 0.654
3sni 546cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.654
3uhm RFNUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.654
1a8r GTPGTP cyclohydrolase 1 3.5.4.16 0.651
2ohq 7IPBeta-secretase 1 3.4.23.46 0.651
2ovv PFHcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.651
3huc G97Mitogen-activated protein kinase 14 / 0.651
3sn7 540cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.651
3u1y 03IUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.651
4fcd 0T6cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A 3.1.4.17 0.650
4joo 1M4Beta-secretase 1 3.4.23.46 0.650