2.000 Å
X-ray
2011-05-12
| Name: | NADPH-dependent 7-cyano-7-deazaguanine reductase |
|---|---|
| ID: | QUEF_VIBCH |
| AC: | Q9KTK0 |
| Organism: | Vibrio cholerae serotype O1 |
| Reign: | Bacteria |
| TaxID: | 243277 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| D | 100 % |
| B-Factor: | 40.235 |
|---|---|
| Number of residues: | 17 |
| Including | |
| Standard Amino Acids: | 16 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.254 | 340.875 |
| % Hydrophobic | % Polar |
|---|---|
| 49.50 | 50.50 |
| According to VolSite | |

| HET Code: | PRF |
|---|---|
| Formula: | C7H10N5O |
| Molecular weight: | 180.187 g/mol |
| DrugBank ID: | DB03304 |
| Buried Surface Area: | 67.92 % |
| Polar Surface area: | 110.91 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 4 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 1 |
| X | Y | Z |
|---|---|---|
| -21.0258 | -27.878 | 0.763154 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N2 | O | ILE- 93 | 2.69 | 155.22 | H-Bond (Ligand Donor) |
| N9 | OE2 | GLU- 94 | 2.77 | 172.43 | H-Bond (Ligand Donor) |
| N3 | N | SER- 95 | 2.79 | 145.82 | H-Bond (Protein Donor) |
| N11 | OD2 | ASP- 201 | 2.78 | 147.61 | H-Bond (Ligand Donor) |
| N11 | OD2 | ASP- 201 | 2.78 | 0 | Ionic (Ligand Cationic) |
| DuAr | DuAr | PHE- 232 | 3.78 | 0 | Aromatic Face/Face |
| O6 | N | HIS- 233 | 2.79 | 161.14 | H-Bond (Protein Donor) |
| N1 | OE1 | GLU- 234 | 2.88 | 165.08 | H-Bond (Ligand Donor) |
| N2 | OE2 | GLU- 234 | 2.75 | 173.14 | H-Bond (Ligand Donor) |