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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ijr NAD Oxidoreductase, short chain dehydrogenase/reductase family

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 1.332
5jyd NADShort chain dehydrogenase / 1.028
3r3s NADPutative oxidoreductase / 0.989
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.846
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.843
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.843
3sx2 NADUncharacterized protein / 0.840
3p19 NDPPutative blue fluorescent protein / 0.834
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.823
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.818
1oaa NAPSepiapterin reductase 1.1.1.153 0.808
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.806
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.803
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.803
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.801
2c29 NAPDihydroflavonol 4-reductase / 0.796
3wds NADNADH-dependent quinuclidinone reductase / 0.795
1pr9 NAPL-xylulose reductase 1.1.1.10 0.794
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.791
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.790
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.784
4kwh NAPReductase homolog / 0.784
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.779
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.778
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.778
4yag NAIC alpha-dehydrogenase / 0.778
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.777
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.775
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.775
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.773
4hxy NDPPlm1 / 0.772
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.771
2jah NDPClavaldehyde dehydrogenase / 0.770
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.769
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.768
3sju NDPKeto reductase / 0.767
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.767
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.765
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.765
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.764
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.764
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.763
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.763
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.762
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.761
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.760
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.759
1xkq NDPUncharacterized protein / 0.759
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.759
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.759
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.757
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.756
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.756
5jla NADPutative short-chain dehydrogenase/reductase / 0.755
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.754
3ko8 NADNAD-dependent epimerase/dehydratase / 0.754
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.753
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.753
3ak4 NADNADH-dependent quinuclidinone reductase / 0.752
3s55 NADPutative short-chain dehydrogenase/reductase / 0.752
4b79 NADProbable short-chain dehydrogenase / 0.752
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.750
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.750
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.749
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.748
3tsc NADUncharacterized protein / 0.748
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.747
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.747
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.745
3icp NADNAD-dependent epimerase/dehydratase / 0.745
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.744
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.741
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.740
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.740
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.739
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.739
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.739
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.738
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.737
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.737
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.736
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.736
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.735
2bfo NDPPteridine reductase 1 1.5.1.33 0.734
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.734
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.733
1ae1 NAPTropinone reductase 1 / 0.732
3bmo NAPPteridine reductase / 0.731
4hwk NAPSepiapterin reductase 1.1.1.153 0.731
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.729
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.728
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.728
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.728
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.727
4yai NAIC alpha-dehydrogenase / 0.727
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.726
4j7x NAPSepiapterin reductase 1.1.1.153 0.726
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.726
1vrw NAIEnoyl-ACP reductase / 0.725
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.725
3aw9 NADNAD-dependent epimerase/dehydratase / 0.723
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.722
3qrw NDPPutative ketoacyl reductase 1.3.1 0.722
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.721
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.721
2dte NAIGlucose 1-dehydrogenase related protein / 0.720
2p5y NADUDP-glucose 4-epimerase / 0.720
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.720
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.719
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.719
4j7u NAPSepiapterin reductase 1.1.1.153 0.719
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.719
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.716
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.716
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.715
4o1m NADEnoyl-acyl carrier reductase / 0.715
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.713
1w4z NAPPutative ketoacyl reductase 1.3.1 0.713
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.713
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.713
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.712
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.712
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.712
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.711
2nq8 ZIDEnoyl-ACP reductase / 0.711
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.710
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.710
4dbz NDPPutative ketoacyl reductase 1.3.1 0.708
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.706
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.706
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.706
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.705
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.705
3d3w NAPL-xylulose reductase 1.1.1.10 0.705
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.705
4bmv NAPShort-chain dehydrogenase / 0.705
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.704
2yut NAPPutative short-chain oxidoreductase / 0.703
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.701
2wsb NADGalactitol dehydrogenase / 0.701
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.701
1sby NADAlcohol dehydrogenase 1.1.1.1 0.700
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.700
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.700
1x7h NDPPutative ketoacyl reductase 1.3.1 0.699
4clo NAPPteridine reductase / 0.699
4wec NADShort chain dehydrogenase / 0.698
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.697
3ai2 NDPNADPH-sorbose reductase / 0.697
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.695
1x7g NAPPutative ketoacyl reductase 1.3.1 0.694
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.694
1b14 NADAlcohol dehydrogenase 1.1.1.1 0.693
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.693
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.693
3lqf NADGalactitol dehydrogenase / 0.693
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.693
3o26 NDPSalutaridine reductase / 0.691
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.691
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.690
2wdz NADGalactitol dehydrogenase / 0.690
3ai3 NDPNADPH-sorbose reductase / 0.690
3tox NAPPutative oxidoreductase / 0.690
1ipe NDPTropinone reductase 2 1.1.1.236 0.689
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.689
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.688
1i3l NADUDP-glucose 4-epimerase / 0.687
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.686
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.685
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.685
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.684
3uce NDPDehydrogenase / 0.684
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.684
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.683
1sny NAPLD36273p / 0.681
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.681
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.681
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.679
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.678
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.678
3h4v NAPPteridine reductase 1 1.5.1.33 0.678
5d2e NAPMlnE / 0.678
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.676
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.676
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.675
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.675
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.675
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.673
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.672
3mje NDPAmphB / 0.671
2bd0 NAPSepiapterin reductase / 0.670
2c20 NADUDP-glucose 4-epimerase / 0.670
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.669
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.668
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.668
5lc1 NADL-threonine 3-dehydrogenase / 0.668
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.667
4qxm NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.666
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.665
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.665
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.664
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.663
4u7w NDPMxaA / 0.663
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.663
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.662
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.662
3geg NADShort-chain dehydrogenase/reductase SDR / 0.660
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.658
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.658
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.658
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.657
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.655
3a9w NADNDP-sugar epimerase / 0.653
1e7q NAPGDP-L-fucose synthase / 0.652
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.652
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.652
1bws NDPGDP-L-fucose synthase / 0.651
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.651
4id9 NADPutative UDP-glucose 4-epimerase / 0.651
4qec NAPElxO / 0.651
4qed NAPElxO / 0.651
1orr NADCDP-paratose 2-epimerase / 0.650
4eso NAPPutative oxidoreductase / 0.650