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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3gy0 NAP NAD(P)-dependent oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3gy0 NAPNAD(P)-dependent oxidoreductase / 1.337
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 1.124
3p19 NDPPutative blue fluorescent protein / 0.964
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.951
4j7x NAPSepiapterin reductase 1.1.1.153 0.949
3o26 NDPSalutaridine reductase / 0.945
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.936
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.932
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.924
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.921
1sny NAPLD36273p / 0.920
4hwk NAPSepiapterin reductase 1.1.1.153 0.913
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.908
4j7u NAPSepiapterin reductase 1.1.1.153 0.899
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.896
3r3s NADPutative oxidoreductase / 0.891
5jyd NADShort chain dehydrogenase / 0.891
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.887
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.874
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.871
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.870
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.867
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.865
4b79 NADProbable short-chain dehydrogenase / 0.863
3f1k NAPUncharacterized oxidoreductase YciK 1 0.858
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.855
1oaa NAPSepiapterin reductase 1.1.1.153 0.854
3l77 NJPShort-chain alcohol dehydrogenase / 0.849
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.848
3tn7 NJPShort-chain alcohol dehydrogenase / 0.848
3h4v NAPPteridine reductase 1 1.5.1.33 0.847
4kwh NAPReductase homolog / 0.847
3s55 NADPutative short-chain dehydrogenase/reductase / 0.843
4bmv NAPShort-chain dehydrogenase / 0.842
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.840
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.838
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.838
2jah NDPClavaldehyde dehydrogenase / 0.836
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.836
3ak4 NADNADH-dependent quinuclidinone reductase / 0.831
3wds NADNADH-dependent quinuclidinone reductase / 0.830
1ae1 NAPTropinone reductase 1 / 0.829
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.827
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.826
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.823
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.823
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.819
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.817
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.816
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.816
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.815
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.815
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.813
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.810
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.809
4u7w NDPMxaA / 0.808
4clo NAPPteridine reductase / 0.807
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.806
2wyv NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.806
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.804
4hxy NDPPlm1 / 0.803
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.798
1pr9 NAPL-xylulose reductase 1.1.1.10 0.796
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.795
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.795
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.794
2c29 NAPDihydroflavonol 4-reductase / 0.793
4dbz NDPPutative ketoacyl reductase 1.3.1 0.792
1x7g NAPPutative ketoacyl reductase 1.3.1 0.791
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.791
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.791
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.791
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.790
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.790
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.789
3tox NAPPutative oxidoreductase / 0.788
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.788
1ipe NDPTropinone reductase 2 1.1.1.236 0.786
1rkx NADCDP-D-glucose-4,6-dehydratase / 0.785
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.784
2p5y NADUDP-glucose 4-epimerase / 0.784
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.781
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.779
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.778
2dte NAIGlucose 1-dehydrogenase related protein / 0.778
3ai2 NDPNADPH-sorbose reductase / 0.778
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.777
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.777
3bmo NAPPteridine reductase / 0.777
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.775
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.775
1b16 NAQAlcohol dehydrogenase 1.1.1.1 0.774
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.772
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.772
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.772
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.772
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.772
3sx2 NADUncharacterized protein / 0.771
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.770
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.770
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.770
3tsc NADUncharacterized protein / 0.770
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.767
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.767
2yy7 NADL-threonine dehydrogenase / 0.766
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.764
2bd0 NAPSepiapterin reductase / 0.764
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.763
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.762
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.762
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.762
4qec NAPElxO / 0.762
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.761
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.759
3d3w NAPL-xylulose reductase 1.1.1.10 0.759
4yai NAIC alpha-dehydrogenase / 0.759
2yut NAPPutative short-chain oxidoreductase / 0.758
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.758
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.757
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.757
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.755
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.755
2wsb NADGalactitol dehydrogenase / 0.755
3qrw NDPPutative ketoacyl reductase 1.3.1 0.755
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.753
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.752
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.749
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.749
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.749
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.748
3ko8 NADNAD-dependent epimerase/dehydratase / 0.748
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.748
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.747
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.747
1x7h NDPPutative ketoacyl reductase 1.3.1 0.746
4wec NADShort chain dehydrogenase / 0.746
1xkq NDPUncharacterized protein / 0.745
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.745
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.744
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.743
5koi NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.743
3geg NADShort-chain dehydrogenase/reductase SDR / 0.742
3sju NDPKeto reductase / 0.742
1rpn NDPGDP-mannose 4,6-dehydratase / 0.741
2aqh NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.741
2ie0 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.741
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.741
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.741
5d2e NAPMlnE / 0.741
1g1a NADdTDP-glucose 4,6-dehydratase / 0.740
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.740
2bfo NDPPteridine reductase 1 1.5.1.33 0.740
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.740
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.740
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.740
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.739
5jla NADPutative short-chain dehydrogenase/reductase / 0.739
3mje NDPAmphB / 0.736
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.735
4qed NAPElxO / 0.735
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.733
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.733
3uce NDPDehydrogenase / 0.732
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.731
1iy8 NADLevodione reductase / 0.731
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.731
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.731
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.730
4yag NAIC alpha-dehydrogenase / 0.730
4fn4 NADShort chain dehydrogenase / 0.725
2aq8 NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.724
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.724
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.724
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.723
2aqi NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.723
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.723
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.722
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.722
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.722
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.721
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.720
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.720
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.719
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.718
1orr NADCDP-paratose 2-epimerase / 0.718
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.718
1sby NADAlcohol dehydrogenase 1.1.1.1 0.717
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.717
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.717
3icp NADNAD-dependent epimerase/dehydratase / 0.715
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.715
3wmx NADNAD dependent epimerase/dehydratase / 0.715
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.714
2nv6 ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.712
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.712
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.711
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.710
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.710
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.710
4imp NDPPolyketide synthase extender modules 3-4 / 0.708
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.706
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.706
5lc1 NADL-threonine 3-dehydrogenase / 0.705
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.704
1vrw NAIEnoyl-ACP reductase / 0.702
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.702
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.700
2nq8 ZIDEnoyl-ACP reductase / 0.699
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.699
1eq2 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.698
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.697
3a4v NADNDP-sugar epimerase / 0.697
3ai3 NDPNADPH-sorbose reductase / 0.697
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.695
1w4z NAPPutative ketoacyl reductase 1.3.1 0.695
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.695
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.694
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.693
2z1m NDPGDP-mannose 4,6-dehydratase / 0.693
3a9w NADNDP-sugar epimerase / 0.693
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.691
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.689
3aw9 NADNAD-dependent epimerase/dehydratase / 0.689
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.688
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.687
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.685
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.683
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.682
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.682
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.682
2h9i EADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.681
4o1m NADEnoyl-acyl carrier reductase / 0.680
3ajr NADNDP-sugar epimerase / 0.678
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.677
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.677
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.677
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.677
4egb NADdTDP-glucose 4,6-dehydratase / 0.676
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.676
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.675
3lqf NADGalactitol dehydrogenase / 0.674
4nbw NADShort-chain dehydrogenase/reductase SDR / 0.673
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.671
1wnt NAPL-xylulose reductase 1.1.1.10 0.669
4eso NAPPutative oxidoreductase / 0.669
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.668
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.667
3pdu NAPGlyoxalate/3-oxopropanoate/4-oxobutanoate reductase / 0.666
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.665
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.664
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.664
4y1b NAPAntE / 0.663
2ntv P1HEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.661
3u4c NDPNADPH-dependent reductase BacG / 0.660
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.658
4bv9 NDPKetimine reductase mu-crystallin 1.5.1.25 0.654
4nd3 NADLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase / 0.654
1e5q NDPSaccharopine dehydrogenase [NADP(+), L-glutamate-forming] 1.5.1.10 0.653
4bkq NAIEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.653
5hws NAP2-dehydropantoate 2-reductase / 0.653
1t2d NADL-lactate dehydrogenase 1.1.1.27 0.652
2pk3 A2RGDP-6-deoxy-D-mannose reductase / 0.651
4fda NAP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.651
1v35 NAIEnoyl-ACP reductase / 0.650
3a1n NADNDP-sugar epimerase / 0.650