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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2hrb NAP Carbonyl reductase [NADPH] 3 1.1.1.184

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 1.347
1n5d NDPCarbonyl reductase [NADPH] 1 / 1.112
3o26 NDPSalutaridine reductase / 1.006
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.981
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.952
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.855
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.846
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.840
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.836
4j7u NAPSepiapterin reductase 1.1.1.153 0.836
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.833
3d3w NAPL-xylulose reductase 1.1.1.10 0.833
4iqg NAPShort-chain dehydrogenase/reductase SDR / 0.830
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.828
1rwb NADGlucose 1-dehydrogenase 1.1.1.47 0.825
1pr9 NAPL-xylulose reductase 1.1.1.10 0.824
4dbz NDPPutative ketoacyl reductase 1.3.1 0.823
4kwh NAPReductase homolog / 0.822
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.821
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.819
4hwk NAPSepiapterin reductase 1.1.1.153 0.817
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.817
1oaa NAPSepiapterin reductase 1.1.1.153 0.807
4j7x NAPSepiapterin reductase 1.1.1.153 0.807
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.805
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.803
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.802
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.799
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.799
1sny NAPLD36273p / 0.798
3p19 NDPPutative blue fluorescent protein / 0.798
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.795
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.793
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.793
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.791
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.790
2dte NAIGlucose 1-dehydrogenase related protein / 0.789
4qec NAPElxO / 0.789
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.788
4b79 NADProbable short-chain dehydrogenase / 0.788
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.786
3wds NADNADH-dependent quinuclidinone reductase / 0.786
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.786
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.785
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.785
4u7w NDPMxaA / 0.785
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.784
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.783
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.783
4wec NADShort chain dehydrogenase / 0.783
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.780
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.779
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.779
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.778
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.777
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.777
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.776
2p5y NADUDP-glucose 4-epimerase / 0.774
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.773
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.771
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.771
1n7h NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.770
2c29 NAPDihydroflavonol 4-reductase / 0.770
1x7h NDPPutative ketoacyl reductase 1.3.1 0.768
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.767
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.766
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.765
3uce NDPDehydrogenase / 0.764
3wmx NADNAD dependent epimerase/dehydratase / 0.764
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.763
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.762
1zem NADXylitol dehydrogenase / 0.760
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.759
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.759
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.757
3qrw NDPPutative ketoacyl reductase 1.3.1 0.757
3s55 NADPutative short-chain dehydrogenase/reductase / 0.757
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.756
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.755
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.754
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.753
1g6k NADGlucose 1-dehydrogenase 1.1.1.47 0.752
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.751
1iy8 NADLevodione reductase / 0.748
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.748
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.746
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.742
3ko8 NADNAD-dependent epimerase/dehydratase / 0.742
1g1a NADdTDP-glucose 4,6-dehydratase / 0.741
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.741
3ehe NADUDP-glucose 4-epimerase (GalE-1) / 0.741
3ijr NADOxidoreductase, short chain dehydrogenase/reductase family / 0.740
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.738
3tox NAPPutative oxidoreductase / 0.738
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.737
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.737
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.736
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.736
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.735
5jla NADPutative short-chain dehydrogenase/reductase / 0.735
4bmv NAPShort-chain dehydrogenase / 0.733
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.732
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 0.732
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.731
3h4v NAPPteridine reductase 1 1.5.1.33 0.730
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.729
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.728
3r3s NADPutative oxidoreductase / 0.728
1bxk NADdTDP-glucose 4,6-dehydratase 2 / 0.727
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.727
4qed NAPElxO / 0.727
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.726
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.726
1xkq NDPUncharacterized protein / 0.725
1ipe NDPTropinone reductase 2 1.1.1.236 0.724
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.723
2hun NAD336aa long hypothetical dTDP-glucose 4,6-dehydratase / 0.722
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.722
4b8z NAPGDP-L-fucose synthase 1.1.1.271 0.722
3bmo NAPPteridine reductase / 0.721
2wdz NADGalactitol dehydrogenase / 0.720
3ai2 NDPNADPH-sorbose reductase / 0.720
3tn7 NJPShort-chain alcohol dehydrogenase / 0.720
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.719
3l77 NJPShort-chain alcohol dehydrogenase / 0.719
4hxy NDPPlm1 / 0.719
4yai NAIC alpha-dehydrogenase / 0.719
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.718
2yut NAPPutative short-chain oxidoreductase / 0.718
2yw9 NAPEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.717
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.716
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.716
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.716
2bd0 NAPSepiapterin reductase / 0.715
4clo NAPPteridine reductase / 0.715
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.714
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.714
3tsc NADUncharacterized protein / 0.714
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.712
3sx2 NADUncharacterized protein / 0.711
2pzj NADPutative nucleotide sugar epimerase/ dehydratase / 0.710
4yag NAIC alpha-dehydrogenase / 0.710
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.709
1x7g NAPPutative ketoacyl reductase 1.3.1 0.709
2wsb NADGalactitol dehydrogenase / 0.709
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.709
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.709
4ej0 NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.709
4twr NADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase / 0.709
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.708
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.708
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.708
2yy7 NADL-threonine dehydrogenase / 0.706
3ak4 NADNADH-dependent quinuclidinone reductase / 0.706
2c54 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.705
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.704
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.704
2jah NDPClavaldehyde dehydrogenase / 0.704
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.704
1ae1 NAPTropinone reductase 1 / 0.703
1orr NADCDP-paratose 2-epimerase / 0.702
3a9w NADNDP-sugar epimerase / 0.702
1rpn NDPGDP-mannose 4,6-dehydratase / 0.701
5lc1 NADL-threonine 3-dehydrogenase / 0.701
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.700
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.700
3icp NADNAD-dependent epimerase/dehydratase / 0.697
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.697
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.697
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.696
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.694
4ccq NAPThioredoxin reductase / 0.694
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.694
1i3l NADUDP-glucose 4-epimerase / 0.693
3ai3 NDPNADPH-sorbose reductase / 0.691
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.690
3gwf NAPCyclohexanone monooxygenase / 0.690
4yr9 NADL-threonine 3-dehydrogenase, mitochondrial 1.1.1.103 0.690
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.689
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.689
1w4z NAPPutative ketoacyl reductase 1.3.1 0.688
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.687
2b69 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.686
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.684
4lk3 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.684
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.683
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.683
4fn4 NADShort chain dehydrogenase / 0.682
1t2a NDPGDP-mannose 4,6 dehydratase 4.2.1.47 0.681
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.679
2bfo NDPPteridine reductase 1 1.5.1.33 0.679
2rcy NAPPyrroline-5-carboxylate reductase / 0.679
4bii NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.678
3a4v NADNDP-sugar epimerase / 0.677
3u4c NDPNADPH-dependent reductase BacG / 0.677
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.677
3mje NDPAmphB / 0.676
1enp NADEnoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic 1.3.1.9 0.675
4gll NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.674
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
2p5u NADUDP-glucose 4-epimerase / 0.672
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
3sju NDPKeto reductase / 0.671
3f1k NAPUncharacterized oxidoreductase YciK 1 0.670
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.670
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
2nq8 ZIDEnoyl-ACP reductase / 0.669
5cku NAPL-ornithine N(5)-monooxygenase / 0.669
2bja NAD1-pyrroline-5-carboxylate dehydrogenase / 0.668
4bqp NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.668
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 0.667
4gcm NAPThioredoxin reductase 1.8.1.9 0.666
5d2e NAPMlnE / 0.666
2ehu NAD1-pyrroline-5-carboxylate dehydrogenase / 0.665
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.665
3w6u NAP6-phosphogluconate dehydrogenase, NAD-binding protein / 0.665
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.665
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.663
2q0l NAPThioredoxin reductase 1.8.1.9 0.663
4eso NAPPutative oxidoreductase / 0.663
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.662
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.662
4bgi NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
4egb NADdTDP-glucose 4,6-dehydratase / 0.662
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.661
3ajr NADNDP-sugar epimerase / 0.661
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.661
4n5n NAPAcetoacetyl-CoA reductase 1.1.1.36 0.661
1nah NADUDP-glucose 4-epimerase 5.1.3.2 0.658
2p9e NAID-3-phosphoglycerate dehydrogenase 1.1.1.95 0.658
1i36 NAPConserved protein / 0.657
4b64 NAPL-ornithine N(5)-monooxygenase / 0.657
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.656
4fda NAP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.655
1hdo NAPFlavin reductase (NADPH) / 0.654
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.654
1wnt NAPL-xylulose reductase 1.1.1.10 0.653
3qfs NAPNADPH--cytochrome P450 reductase / 0.653
3qft NAPNADPH--cytochrome P450 reductase / 0.653
4m55 NADUDP-glucuronic acid decarboxylase 1 4.1.1.35 0.653
3nt6 COAFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.652
4kzo NAPIsocitrate dehydrogenase [NADP] cytoplasmic 1.1.1.42 0.652
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.652
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.651
3qfc NAPNADPH--cytochrome P450 reductase / 0.651
3lqf NADGalactitol dehydrogenase / 0.650