1.900 Å
X-ray
2005-02-01
| Name: | 1-pyrroline-5-carboxylate dehydrogenase |
|---|---|
| ID: | Q5SI02_THET8 |
| AC: | Q5SI02 |
| Organism: | Thermus thermophilus |
| Reign: | Bacteria |
| TaxID: | 300852 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 26.657 |
|---|---|
| Number of residues: | 34 |
| Including | |
| Standard Amino Acids: | 34 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.829 | 945.000 |
| % Hydrophobic | % Polar |
|---|---|
| 44.64 | 55.36 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 54.53 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 9.52141 | 36.7591 | 129.314 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1B | CG2 | ILE- 180 | 3.5 | 0 | Hydrophobic |
| C4B | CG2 | ILE- 180 | 3.75 | 0 | Hydrophobic |
| O3B | O | ALA- 181 | 2.66 | 168.33 | H-Bond (Ligand Donor) |
| O1N | NE1 | TRP- 183 | 2.65 | 162.72 | H-Bond (Protein Donor) |
| O3B | NZ | LYS- 207 | 3.21 | 124.21 | H-Bond (Protein Donor) |
| C3B | CB | ALA- 209 | 4 | 0 | Hydrophobic |
| O2B | OE2 | GLU- 210 | 2.75 | 167.05 | H-Bond (Ligand Donor) |
| C5B | CE1 | PHE- 258 | 3.99 | 0 | Hydrophobic |
| O1A | N | SER- 261 | 2.73 | 156.84 | H-Bond (Protein Donor) |