sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2bja | NAD | 1-pyrroline-5-carboxylate dehydrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2bja | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.861 | |
| 2j40 | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.788 | |
| 2ehu | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.780 | |
| 4pz2 | NAD | Aldehyde dehydrogenase 2-6 | / | 0.780 | |
| 2bhp | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.779 | |
| 2j5n | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.775 | |
| 4i9b | NAD | Putative betaine aldehyde dehyrogenase | / | 0.773 | |
| 4pxl | NAD | Aldehyde dehydrogenase3 | / | 0.772 | |
| 2eii | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.770 | |
| 4fr8 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.770 | |
| 3iwj | NAD | Aminoaldehyde dehydrogenase | / | 0.755 | |
| 4i1w | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.746 | |
| 4i8q | NAD | Putative betaine aldehyde dehyrogenase | / | 0.745 | |
| 4fr8 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.744 | |
| 1o9j | NAD | Aldehyde dehydrogenase, cytosolic 1 | 1.2.1.3 | 0.740 | |
| 2wme | NAP | NAD/NADP-dependent betaine aldehyde dehydrogenase | / | 0.738 | |
| 3n83 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.735 | |
| 1o02 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.731 | |
| 1o04 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.729 | |
| 2eit | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.729 | |
| 4nmj | NAP | Aldehyde dehydrogenase | / | 0.729 | |
| 1a4z | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.726 | |
| 1bi9 | NAD | Retinal dehydrogenase 2 | / | 0.722 | |
| 2ehq | NAP | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.719 | |
| 1nzx | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.715 | |
| 4h73 | NDP | Aldehyde dehydrogenase | / | 0.713 | |
| 2onp | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.707 | |
| 4nmk | NAP | Aldehyde dehydrogenase | / | 0.706 | |
| 4x2q | NAD | Retinal dehydrogenase 2 | 1.2.1.36 | 0.706 | |
| 2onm | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.704 | |
| 2y5d | NAP | 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase | / | 0.703 | |
| 3n82 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.702 | |
| 4fqf | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.702 | |
| 4ihi | NAD | Probable pyrroline-5-carboxylate dehydrogenase RocA | / | 0.701 | |
| 2w8r | ADP | Succinate-semialdehyde dehydrogenase, mitochondrial | 1.2.1.24 | 0.700 | |
| 4f3x | NAD | Putative aldehyde dehydrogenase | / | 0.700 | |
| 4i3w | NAD | Aldehyde dehydrogenase (NAD+) | / | 0.696 | |
| 3b4w | NAD | Aldehyde dehydrogenase family protein | / | 0.695 | |
| 3rho | NAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.691 | |
| 4itb | NDP | Succinate-semialdehyde dehydrogenase | / | 0.691 | |
| 4v37 | NAD | Betaine aldehyde dehydrogenase, chloroplastic | 1.2.1.8 | 0.691 | |
| 3haz | NAD | Bifunctional protein PutA | / | 0.689 | |
| 4oe2 | NAD | 2-aminomuconate 6-semialdehyde dehydrogenase | / | 0.689 | |
| 5eyu | NAD | Betaine-aldehyde dehydrogenase | / | 0.689 | |
| 4jdc | NAD | Probable pyrroline-5-carboxylate dehydrogenase RocA | / | 0.688 | |
| 4i8p | NAD | Aminoaldehyde dehydrogenase 1 | / | 0.687 | |
| 1uxr | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.684 | |
| 2o2r | NDP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.684 | |
| 3efv | NAD | Putative succinate-semialdehyde dehydrogenase | / | 0.684 | |
| 2xdr | NDP | NAD/NADP-dependent betaine aldehyde dehydrogenase | / | 0.683 | |
| 2imp | NAI | Lactaldehyde dehydrogenase | 1.2.1.22 | 0.682 | |
| 4go2 | TAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.679 | |
| 4zuk | NAD | Alpha-aminoadipic semialdehyde dehydrogenase | 1.2.1.31 | 0.677 | |
| 4c3s | NAD | Aldehyde Dehydrogenase | / | 0.673 | |
| 3rhd | NAP | Lactaldehyde dehydrogenase | 1.2.1.22 | 0.672 | |
| 5dib | NAD | Betaine-aldehyde dehydrogenase | / | 0.671 | |
| 2hrb | NAP | Carbonyl reductase [NADPH] 3 | 1.1.1.184 | 0.668 | |
| 4i3v | NAD | Aldehyde dehydrogenase (NAD+) | / | 0.668 | |
| 4a0m | NAD | Betaine aldehyde dehydrogenase, chloroplastic | 1.2.1.8 | 0.662 | |
| 1wnb | NAI | Gamma-aminobutyraldehyde dehydrogenase | 1.2.1.19 | 0.661 | |
| 4yag | NAI | C alpha-dehydrogenase | / | 0.654 | |
| 3icp | NAD | NAD-dependent epimerase/dehydratase | / | 0.653 | |
| 4oe4 | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 | 0.653 | |
| 1qi1 | NAP | NADP-dependent glyceraldehyde-3-phosphate dehydrogenase | 1.2.1.9 | 0.652 | |
| 2ztm | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.652 | |
| 5ez4 | NAD | Betaine-aldehyde dehydrogenase | / | 0.652 | |
| 5bt9 | NAP | 3-oxoacyl-(Acyl-carrier-protein) reductase | / | 0.651 | |
| 2c5e | GDD | GDP-mannose 3,5-epimerase | 5.1.3.18 | 0.650 | |
| 2q1u | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.650 | |
| 3pgx | NAD | Uncharacterized NAD-dependent oxidoreductase MAP_4146 | / | 0.650 | |
| 4clo | NAP | Pteridine reductase | / | 0.650 |