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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i7c MGB S-adenosylmethionine decarboxylase proenzyme 4.1.1.50

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i7c MGBS-adenosylmethionine decarboxylase proenzyme 4.1.1.50 0.718
1dgm ADNAdenosine kinase 2.7.1.20 0.660
1n6m ADPProtein claret segregational / 0.660
1u26 IHSMyo-inositol hexaphosphate phosphohydrolase / 0.660
1v8k ANPKinesin-like protein KIF2C / 0.660
1yf8 P6CBeta-galactoside-specific lectin 4 3.2.2.22 0.660
2gyu HI6Acetylcholinesterase 3.1.1.7 0.660
2oem 1AE2,3-diketo-5-methylthiopentyl-1-phosphate enolase 5.3.2.5 0.660
2zsa ADPPantothenate kinase 2.7.1.33 0.660
2zsb ADPPantothenate kinase 2.7.1.33 0.660
3ar5 TM1Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.660
3cob ADPKinesin heavy chain-like protein / 0.660
3lm9 ADPPutative fructokinase 2.7.1.4 0.660
3ppo DCKGlycine betaine/carnitine/choline-binding protein OpuCC / 0.660
4at8 ATPInterleukin enhancer-binding factor 2 / 0.660
4blt APCNTPase P4 / 0.660
4cvl ACPUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase / 0.660
4diq PD2Ribosomal oxygenase 1 / 0.660
4dpg APCLysine--tRNA ligase 6.1.1.6 0.660
4e09 ACPPlasmid partitioning protein ParF / 0.660
4fdu IHSPutative multiple inositol polyphosphate histidine phosphatase 1 / 0.660
4rf9 AGSArginine kinase 2.7.3.3 0.660
5egh PCEctonucleotide pyrophosphatase/phosphodiesterase family member 6 / 0.660
5eso ISC2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.660
3w8r ACPUridine kinase / 0.656
2jjx ATPUridylate kinase / 0.654
3af3 GCPPantothenate kinase 2.7.1.33 0.654
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.654
1ybu APCProbable lignin peroxidase LipJ / 0.653
2zfi ADPKinesin-like protein KIF1A / 0.653
3ta2 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.653
1r8b ATPCCA-adding enzyme 2.7.7.72 0.652
1r8c UTPCCA-adding enzyme 2.7.7.72 0.652
2qf2 GDPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.652
3au2 DGTDNA polymerase beta family (X family) / 0.652
4ie5 MD6Alpha-ketoglutarate-dependent dioxygenase FTO / 0.652
4uz6 SCRPalmitoleoyl-protein carboxylesterase NOTUM / 0.652
5eox ADPType 4 fimbrial biogenesis protein PilM / 0.652
4dsj DGTDNA polymerase I / 0.651
2vd7 PD2Lysine-specific demethylase 4A 1.14.11 0.650
2zev IPEGeranylgeranyl pyrophosphate synthase / 0.650
4cei ANPATP-dependent helicase/deoxyribonuclease subunit B 3.1 0.650
4lxl PD2Lysine-specific demethylase 4B 1.14.11 0.650