2.820 Å
X-ray
2008-04-23
| Name: | Uridylate kinase |
|---|---|
| ID: | Q81S73_BACAN |
| AC: | Q81S73 |
| Organism: | Bacillus anthracis |
| Reign: | Bacteria |
| TaxID: | 1392 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 59 % |
| B | 32 % |
| C | 9 % |
| B-Factor: | 97.019 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 19 |
| Non Standard Amino Acids: | 3 |
| Water Molecules: | 0 |
| Cofactors: | ATP ATP |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.514 | 1164.375 |
| % Hydrophobic | % Polar |
|---|---|
| 34.49 | 65.51 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 48.91 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 41.6195 | -26.2582 | 112.979 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3G | CZ | ARG- 99 | 3.95 | 0 | Ionic (Protein Cationic) |
| O1A | CZ | ARG- 99 | 2.9 | 0 | Ionic (Protein Cationic) |
| O1A | NH1 | ARG- 99 | 2.75 | 124.57 | H-Bond (Protein Donor) |
| O2A | CZ | ARG- 117 | 3.84 | 0 | Ionic (Protein Cationic) |
| O2A | NH2 | ARG- 117 | 2.7 | 144.77 | H-Bond (Protein Donor) |
| C4' | CG | ARG- 117 | 3.96 | 0 | Hydrophobic |
| O2G | NE2 | HIS- 120 | 2.56 | 121.53 | H-Bond (Protein Donor) |