2.820 Å
X-ray
2008-04-23
Name: | Uridylate kinase |
---|---|
ID: | Q81S73_BACAN |
AC: | Q81S73 |
Organism: | Bacillus anthracis |
Reign: | Bacteria |
TaxID: | 1392 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 59 % |
B | 32 % |
C | 9 % |
B-Factor: | 97.019 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 19 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 0 |
Cofactors: | ATP ATP |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.514 | 1164.375 |
% Hydrophobic | % Polar |
---|---|
34.49 | 65.51 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 48.91 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
41.6195 | -26.2582 | 112.979 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3G | CZ | ARG- 99 | 3.95 | 0 | Ionic (Protein Cationic) |
O1A | CZ | ARG- 99 | 2.9 | 0 | Ionic (Protein Cationic) |
O1A | NH1 | ARG- 99 | 2.75 | 124.57 | H-Bond (Protein Donor) |
O2A | CZ | ARG- 117 | 3.84 | 0 | Ionic (Protein Cationic) |
O2A | NH2 | ARG- 117 | 2.7 | 144.77 | H-Bond (Protein Donor) |
C4' | CG | ARG- 117 | 3.96 | 0 | Hydrophobic |
O2G | NE2 | HIS- 120 | 2.56 | 121.53 | H-Bond (Protein Donor) |