1.900 Å
X-ray
2003-10-23
Name: | CCA-adding enzyme |
---|---|
ID: | CCA_ARCFU |
AC: | O28126 |
Organism: | Archaeoglobus fulgidus |
Reign: | Archaea |
TaxID: | 224325 |
EC Number: | 2.7.7.72 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 31.766 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MN MN MN |
Ligandability | Volume (Å3) |
---|---|
1.071 | 1258.875 |
% Hydrophobic | % Polar |
---|---|
42.36 | 57.64 |
According to VolSite |
HET Code: | UTP |
---|---|
Formula: | C9H11N2O15P3 |
Molecular weight: | 480.109 g/mol |
DrugBank ID: | DB04005 |
Buried Surface Area: | 41.48 % |
Polar Surface area: | 299.67 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 15 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
16.0015 | 13.252 | 34.3556 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2B | N | SER- 47 | 2.95 | 151.6 | H-Bond (Protein Donor) |
O1G | OG | SER- 47 | 2.62 | 169.67 | H-Bond (Protein Donor) |
C4' | CG2 | THR- 130 | 3.43 | 0 | Hydrophobic |
O3' | ND1 | HIS- 133 | 3.49 | 122.74 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 152 | 3.34 | 137.51 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 152 | 3.34 | 0 | Ionic (Protein Cationic) |
O2G | OH | TYR- 161 | 2.72 | 126.27 | H-Bond (Protein Donor) |
O1A | MN | MN- 600 | 2.31 | 0 | Metal Acceptor |
O2B | MN | MN- 600 | 2.09 | 0 | Metal Acceptor |
O3G | MN | MN- 600 | 2.31 | 0 | Metal Acceptor |