1.700 Å
X-ray
2006-12-30
Name: | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase |
---|---|
ID: | MTNW_GEOKA |
AC: | Q5L1E2 |
Organism: | Geobacillus kaustophilus |
Reign: | Bacteria |
TaxID: | 235909 |
EC Number: | 5.3.2.5 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 6 % |
B | 94 % |
B-Factor: | 17.990 |
---|---|
Number of residues: | 17 |
Including | |
Standard Amino Acids: | 14 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 1 |
Cofactors: | |
Metals: | MG |
Ligandability | Volume (Å3) |
---|---|
0.128 | 715.500 |
% Hydrophobic | % Polar |
---|---|
41.98 | 58.02 |
According to VolSite |
HET Code: | 1AE |
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Formula: | C6H9O6P |
Molecular weight: | 208.106 g/mol |
DrugBank ID: | DB06881 |
Buried Surface Area: | 40.3 % |
Polar Surface area: | 119.53 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 1 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
28.065 | -23.4017 | -19.8118 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C6 | CD1 | ILE- 145 | 4.43 | 0 | Hydrophobic |
O10 | N | GLY- 337 | 3.39 | 173.14 | H-Bond (Protein Donor) |
O7 | N | GLY- 360 | 3.32 | 174.82 | H-Bond (Protein Donor) |
O9 | O | HOH- 1227 | 3 | 170.6 | H-Bond (Protein Donor) |