1.700 Å
X-ray
2006-12-30
| Name: | 2,3-diketo-5-methylthiopentyl-1-phosphate enolase |
|---|---|
| ID: | MTNW_GEOKA |
| AC: | Q5L1E2 |
| Organism: | Geobacillus kaustophilus |
| Reign: | Bacteria |
| TaxID: | 235909 |
| EC Number: | 5.3.2.5 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 6 % |
| B | 94 % |
| B-Factor: | 17.990 |
|---|---|
| Number of residues: | 17 |
| Including | |
| Standard Amino Acids: | 14 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | MG |
| Ligandability | Volume (Å3) |
|---|---|
| 0.128 | 715.500 |
| % Hydrophobic | % Polar |
|---|---|
| 41.98 | 58.02 |
| According to VolSite | |

| HET Code: | 1AE |
|---|---|
| Formula: | C6H9O6P |
| Molecular weight: | 208.106 g/mol |
| DrugBank ID: | DB06881 |
| Buried Surface Area: | 40.3 % |
| Polar Surface area: | 119.53 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 1 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 28.065 | -23.4017 | -19.8118 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C6 | CD1 | ILE- 145 | 4.43 | 0 | Hydrophobic |
| O10 | N | GLY- 337 | 3.39 | 173.14 | H-Bond (Protein Donor) |
| O7 | N | GLY- 360 | 3.32 | 174.82 | H-Bond (Protein Donor) |
| O9 | O | HOH- 1227 | 3 | 170.6 | H-Bond (Protein Donor) |