2.400 Å
X-ray
2001-03-08
| Name: | S-adenosylmethionine decarboxylase proenzyme |
|---|---|
| ID: | DCAM_HUMAN |
| AC: | P17707 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | 4.1.1.50 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 29 % |
| A | 71 % |
| B-Factor: | 23.196 |
|---|---|
| Number of residues: | 23 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.315 | 425.250 |
| % Hydrophobic | % Polar |
|---|---|
| 39.68 | 60.32 |
| According to VolSite | |

| HET Code: | MGB |
|---|---|
| Formula: | C5H14N8 |
| Molecular weight: | 186.218 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 63.6 % |
| Polar Surface area: | 152 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 6 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 0 |
| Cationic atoms: | 2 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| -17.0312 | -6.00215 | 7.03015 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C6 | CE2 | PHE- 7 | 4.26 | 0 | Hydrophobic |
| N12 | O | LEU- 65 | 2.73 | 140.08 | H-Bond (Ligand Donor) |
| C6 | CD1 | PHE- 223 | 3.89 | 0 | Hydrophobic |
| N12 | OG | SER- 229 | 2.58 | 138.58 | H-Bond (Ligand Donor) |
| N1 | OE2 | GLU- 247 | 3.35 | 124.03 | H-Bond (Ligand Donor) |
| N1 | OE1 | GLU- 247 | 2.81 | 136.2 | H-Bond (Ligand Donor) |