2.400 Å
X-ray
2004-12-21
Name: | Probable lignin peroxidase LipJ |
---|---|
ID: | O07732_MYCTU |
AC: | O07732 |
Organism: | Mycobacterium tuberculosis |
Reign: | Bacteria |
TaxID: | 83332 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 57 % |
D | 43 % |
B-Factor: | 46.632 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN |
Ligandability | Volume (Å3) |
---|---|
0.685 | 1802.250 |
% Hydrophobic | % Polar |
---|---|
35.39 | 64.61 |
According to VolSite |
HET Code: | APC |
---|---|
Formula: | C11H14N5O12P3 |
Molecular weight: | 501.176 g/mol |
DrugBank ID: | DB02596 |
Buried Surface Area: | 44.41 % |
Polar Surface area: | 310.64 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
28.0568 | 60.4919 | 56.2413 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2G | N | GLY- 305 | 2.68 | 138.07 | H-Bond (Protein Donor) |
O3G | NE2 | GLN- 308 | 3.31 | 141.22 | H-Bond (Protein Donor) |
C1' | CB | ALA- 405 | 3.71 | 0 | Hydrophobic |
O3G | NZ | LYS- 442 | 2.82 | 145.55 | H-Bond (Protein Donor) |
O1A | MN | MN- 502 | 2.49 | 0 | Metal Acceptor |
O2A | MN | MN- 502 | 2.3 | 0 | Metal Acceptor |