2.400 Å
X-ray
2004-12-21
| Name: | Probable lignin peroxidase LipJ |
|---|---|
| ID: | O07732_MYCTU |
| AC: | O07732 |
| Organism: | Mycobacterium tuberculosis |
| Reign: | Bacteria |
| TaxID: | 83332 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| C | 57 % |
| D | 43 % |
| B-Factor: | 46.632 |
|---|---|
| Number of residues: | 30 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | MN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.685 | 1802.250 |
| % Hydrophobic | % Polar |
|---|---|
| 35.39 | 64.61 |
| According to VolSite | |

| HET Code: | APC |
|---|---|
| Formula: | C11H14N5O12P3 |
| Molecular weight: | 501.176 g/mol |
| DrugBank ID: | DB02596 |
| Buried Surface Area: | 44.41 % |
| Polar Surface area: | 310.64 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 28.0568 | 60.4919 | 56.2413 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O2G | N | GLY- 305 | 2.68 | 138.07 | H-Bond (Protein Donor) |
| O3G | NE2 | GLN- 308 | 3.31 | 141.22 | H-Bond (Protein Donor) |
| C1' | CB | ALA- 405 | 3.71 | 0 | Hydrophobic |
| O3G | NZ | LYS- 442 | 2.82 | 145.55 | H-Bond (Protein Donor) |
| O1A | MN | MN- 502 | 2.49 | 0 | Metal Acceptor |
| O2A | MN | MN- 502 | 2.3 | 0 | Metal Acceptor |