2.000 Å
X-ray
2003-10-23
Name: | CCA-adding enzyme |
---|---|
ID: | CCA_ARCFU |
AC: | O28126 |
Organism: | Archaeoglobus fulgidus |
Reign: | Archaea |
TaxID: | 224325 |
EC Number: | 2.7.7.72 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 29.453 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 33 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | CL MN MG |
Ligandability | Volume (Å3) |
---|---|
0.656 | 853.875 |
% Hydrophobic | % Polar |
---|---|
46.25 | 53.75 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 44.58 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
16.8445 | 13.7222 | 35.047 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1G | OG | SER- 47 | 2.66 | 166.12 | H-Bond (Protein Donor) |
O2B | N | SER- 47 | 2.88 | 143.15 | H-Bond (Protein Donor) |
C1' | CG2 | THR- 130 | 3.26 | 0 | Hydrophobic |
O1G | NZ | LYS- 152 | 3.2 | 139.58 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 152 | 3.2 | 0 | Ionic (Protein Cationic) |
O2G | OH | TYR- 161 | 2.63 | 143.09 | H-Bond (Protein Donor) |
O3G | MN | MN- 600 | 2.2 | 0 | Metal Acceptor |
O2B | MN | MN- 600 | 2.23 | 0 | Metal Acceptor |
O1A | MN | MN- 600 | 2.27 | 0 | Metal Acceptor |